Gene : Glyma.13G172000 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR32295:SF9 - IQ-DOMAIN 9 PROTEIN Genomic Order:  1720
Name:  ? Glyma.13G172000 Secondary Identifier:  ? PAC:30501178
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G172000 0.5kb upstream 0.5kb upstream 5351 true Chr13: 28593222-28598572 Glycine max
Glyma.13G172000 0.5kb upstream 0.5kb upstream 500 false Chr13: 28598073-28598572 Glycine max
Glyma.13G172000 0.5kb downstream 0.5kb downstream 5351 true Chr13: 28592722-28598072 Glycine max
Glyma.13G172000 0.5kb downstream 0.5kb downstream 500 false Chr13: 28592722-28593221 Glycine max
Glyma.13G172000 1.0kb upstream 1.0kb upstream 5851 true Chr13: 28593222-28599072 Glycine max
Glyma.13G172000 1.0kb upstream 1.0kb upstream 1000 false Chr13: 28598073-28599072 Glycine max
Glyma.13G172000 1.0kb downstream 1.0kb downstream 5851 true Chr13: 28592222-28598072 Glycine max
Glyma.13G172000 1.0kb downstream 1.0kb downstream 1000 false Chr13: 28592222-28593221 Glycine max
Glyma.13G172000 2.0kb upstream 2.0kb upstream 6851 true Chr13: 28593222-28600072 Glycine max
Glyma.13G172000 2.0kb upstream 2.0kb upstream 2000 false Chr13: 28598073-28600072 Glycine max
Glyma.13G172000 2.0kb downstream 2.0kb downstream 6851 true Chr13: 28591222-28598072 Glycine max
Glyma.13G172000 2.0kb downstream 2.0kb downstream 2000 false Chr13: 28591222-28593221 Glycine max
Glyma.13G172000 5.0kb upstream 5.0kb upstream 9851 true Chr13: 28593222-28603072 Glycine max
Glyma.13G172000 5.0kb upstream 5.0kb upstream 5000 false Chr13: 28598073-28603072 Glycine max
Glyma.13G172000 5.0kb downstream 5.0kb downstream 9851 true Chr13: 28588222-28598072 Glycine max
Glyma.13G172000 5.0kb downstream 5.0kb downstream 5000 false Chr13: 28588222-28593221 Glycine max
Glyma.13G172000 10.0kb upstream 10.0kb upstream 14851 true Chr13: 28593222-28608072 Glycine max
Glyma.13G172000 10.0kb upstream 10.0kb upstream 10000 false Chr13: 28598073-28608072 Glycine max
Glyma.13G172000 10.0kb downstream 10.0kb downstream 14851 true Chr13: 28583222-28598072 Glycine max
Glyma.13G172000 10.0kb downstream 10.0kb downstream 10000 false Chr13: 28583222-28593221 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250182 5265 Fabidae View MSA
123993465 5270 Rosid View MSA
123568236 5271 Pentapetalae View MSA
122602983 5272 Eudicot View MSA
122044969 5273 Angiosperm View MSA
121310374 5274 Embryophyte View MSA
123347875 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.0167 0.0 177.354 High High
cufflinks 5.17051 0.0 22.1896    
cufflinks 7.11862 0.0 32.2611    
cufflinks 5.73514 0.0 23.8446    
cufflinks 4.37595 0.0 20.6591    
cufflinks 38.2099 0.0 173.166 High High
cufflinks 2.63064 0.0 12.2593   Low
cufflinks 17.8388 0.0 76.7252    
cufflinks 7.79203 0.0 29.727    
cufflinks 0.852        
cufflinks 1.784       High
cufflinks 0.551        
cufflinks 0.617        
cufflinks 0.177       Low
cufflinks 0.743        
cufflinks 0.847        
cufflinks 1.964       High
cufflinks 0.425        
cufflinks 0.436        
cufflinks 0.705        
cufflinks 1.817       High
cufflinks 0.908        
cufflinks 0.47        
cufflinks 1.82       High
cufflinks 0.691        
cufflinks 1.834       High

0 Strain