Gene : Glyma.13G127800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  1278
Name:  ? Glyma.13G127800 Secondary Identifier:  ? PAC:30503964
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G127800 0.5kb upstream 0.5kb upstream 6524 true Chr13: 24080237-24086760 Glycine max
Glyma.13G127800 0.5kb upstream 0.5kb upstream 500 false Chr13: 24080237-24080736 Glycine max
Glyma.13G127800 0.5kb downstream 0.5kb downstream 6524 true Chr13: 24080737-24087260 Glycine max
Glyma.13G127800 0.5kb downstream 0.5kb downstream 500 false Chr13: 24086761-24087260 Glycine max
Glyma.13G127800 1.0kb upstream 1.0kb upstream 7024 true Chr13: 24079737-24086760 Glycine max
Glyma.13G127800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24079737-24080736 Glycine max
Glyma.13G127800 1.0kb downstream 1.0kb downstream 7024 true Chr13: 24080737-24087760 Glycine max
Glyma.13G127800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24086761-24087760 Glycine max
Glyma.13G127800 2.0kb upstream 2.0kb upstream 8024 true Chr13: 24078737-24086760 Glycine max
Glyma.13G127800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24078737-24080736 Glycine max
Glyma.13G127800 2.0kb downstream 2.0kb downstream 8024 true Chr13: 24080737-24088760 Glycine max
Glyma.13G127800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24086761-24088760 Glycine max
Glyma.13G127800 5.0kb upstream 5.0kb upstream 11024 true Chr13: 24075737-24086760 Glycine max
Glyma.13G127800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24075737-24080736 Glycine max
Glyma.13G127800 5.0kb downstream 5.0kb downstream 11024 true Chr13: 24080737-24091760 Glycine max
Glyma.13G127800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24086761-24091760 Glycine max
Glyma.13G127800 10.0kb upstream 10.0kb upstream 16024 true Chr13: 24070737-24086760 Glycine max
Glyma.13G127800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24070737-24080736 Glycine max
Glyma.13G127800 10.0kb downstream 10.0kb downstream 16024 true Chr13: 24080737-24096760 Glycine max
Glyma.13G127800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24086761-24096760 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299724 5265 Fabidae View MSA
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.05587 0.0 29.722    
cufflinks 5.51541 0.0 19.1766    
cufflinks 4.32459 0.0 15.8912   Low
cufflinks 6.58135 0.0 25.2397    
cufflinks 6.8341 0.0 26.1386    
cufflinks 6.57351 0.0 25.3684    
cufflinks 10.1382 0.0 36.182   High
cufflinks 7.26822 0.0 27.14    
cufflinks 8.58828 0.0 31.2165    
cufflinks 0.699        
cufflinks 0.241       Low
cufflinks 0.693        
cufflinks 1.17       High
cufflinks 1.503       High
cufflinks 0.445        
cufflinks 0.515        
cufflinks 0.572        
cufflinks 1.027       High
cufflinks 0.616        
cufflinks 0.579        
cufflinks 0.365       Low
cufflinks 0.605        
cufflinks 0.687        
cufflinks 0.343       Low
cufflinks 0.616        
cufflinks 0.497        

0 Strain