Gene : Glyma.13G088400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22904//PTHR22904:SF360 - TPR REPEAT CONTAINING PROTEIN Genomic Order:  884
Name:  ? Glyma.13G088400 Secondary Identifier:  ? PAC:30505225
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G088400 0.5kb upstream 0.5kb upstream 4303 true Chr13: 20228085-20232387 Glycine max
Glyma.13G088400 0.5kb upstream 0.5kb upstream 500 false Chr13: 20231888-20232387 Glycine max
Glyma.13G088400 0.5kb downstream 0.5kb downstream 4303 true Chr13: 20227585-20231887 Glycine max
Glyma.13G088400 0.5kb downstream 0.5kb downstream 500 false Chr13: 20227585-20228084 Glycine max
Glyma.13G088400 1.0kb upstream 1.0kb upstream 4803 true Chr13: 20228085-20232887 Glycine max
Glyma.13G088400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 20231888-20232887 Glycine max
Glyma.13G088400 1.0kb downstream 1.0kb downstream 4803 true Chr13: 20227085-20231887 Glycine max
Glyma.13G088400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 20227085-20228084 Glycine max
Glyma.13G088400 2.0kb upstream 2.0kb upstream 5803 true Chr13: 20228085-20233887 Glycine max
Glyma.13G088400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 20231888-20233887 Glycine max
Glyma.13G088400 2.0kb downstream 2.0kb downstream 5803 true Chr13: 20226085-20231887 Glycine max
Glyma.13G088400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 20226085-20228084 Glycine max
Glyma.13G088400 5.0kb upstream 5.0kb upstream 8803 true Chr13: 20228085-20236887 Glycine max
Glyma.13G088400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 20231888-20236887 Glycine max
Glyma.13G088400 5.0kb downstream 5.0kb downstream 8803 true Chr13: 20223085-20231887 Glycine max
Glyma.13G088400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 20223085-20228084 Glycine max
Glyma.13G088400 10.0kb upstream 10.0kb upstream 13803 true Chr13: 20228085-20241887 Glycine max
Glyma.13G088400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 20231888-20241887 Glycine max
Glyma.13G088400 10.0kb downstream 10.0kb downstream 13803 true Chr13: 20218085-20231887 Glycine max
Glyma.13G088400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 20218085-20228084 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311538 5265 Fabidae View MSA
124069860 5270 Rosid View MSA
123742749 5271 Pentapetalae View MSA
122798057 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0273993 0.0 0.11165 Low Low
cufflinks 0.0978178 0.0 0.691257 Low  
cufflinks 0.0337827 0.0 0.136892 Low Low
cufflinks 0.282266 0.0 1.73144    
cufflinks 4.80808 0.0 17.3452    
cufflinks 77.3671 0.0 374.023 High High
cufflinks 0.0949438 0.0 0.368593 Low  
cufflinks 7.73996 0.0 26.4227    
cufflinks 7.08977 0.0 24.4149    
cufflinks 0.509        
cufflinks 0.706        
cufflinks 0.031     Low Low
cufflinks 9.947     High High
cufflinks 2.581       High
cufflinks 0.282        
cufflinks 0.078     Low  
cufflinks 1.823       High
cufflinks 0.123        
cufflinks 0.046     Low Low
cufflinks 0.068     Low  
cufflinks 0.487        
cufflinks 0.117        
cufflinks 0.118        
cufflinks 0.314        
cufflinks 0.065     Low  
cufflinks 1.738       High

0 Strain