Gene : Glyma.13G003900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12303:SF6 - UPF0586 PROTEIN C9ORF41 Genomic Order:  39
Name:  ? Glyma.13G003900 Secondary Identifier:  ? PAC:30504365
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G003900 0.5kb upstream 0.5kb upstream 9291 true Chr13: 1072147-1081437 Glycine max
Glyma.13G003900 0.5kb upstream 0.5kb upstream 500 false Chr13: 1080938-1081437 Glycine max
Glyma.13G003900 0.5kb downstream 0.5kb downstream 9291 true Chr13: 1071647-1080937 Glycine max
Glyma.13G003900 0.5kb downstream 0.5kb downstream 500 false Chr13: 1071647-1072146 Glycine max
Glyma.13G003900 1.0kb upstream 1.0kb upstream 9791 true Chr13: 1072147-1081937 Glycine max
Glyma.13G003900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 1080938-1081937 Glycine max
Glyma.13G003900 1.0kb downstream 1.0kb downstream 9791 true Chr13: 1071147-1080937 Glycine max
Glyma.13G003900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 1071147-1072146 Glycine max
Glyma.13G003900 2.0kb upstream 2.0kb upstream 10791 true Chr13: 1072147-1082937 Glycine max
Glyma.13G003900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 1080938-1082937 Glycine max
Glyma.13G003900 2.0kb downstream 2.0kb downstream 10791 true Chr13: 1070147-1080937 Glycine max
Glyma.13G003900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 1070147-1072146 Glycine max
Glyma.13G003900 5.0kb upstream 5.0kb upstream 13791 true Chr13: 1072147-1085937 Glycine max
Glyma.13G003900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 1080938-1085937 Glycine max
Glyma.13G003900 5.0kb downstream 5.0kb downstream 13791 true Chr13: 1067147-1080937 Glycine max
Glyma.13G003900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 1067147-1072146 Glycine max
Glyma.13G003900 10.0kb upstream 10.0kb upstream 18791 true Chr13: 1072147-1090937 Glycine max
Glyma.13G003900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 1080938-1090937 Glycine max
Glyma.13G003900 10.0kb downstream 10.0kb downstream 18791 true Chr13: 1062147-1080937 Glycine max
Glyma.13G003900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 1062147-1072146 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304958 5265 Fabidae View MSA
124060622 5270 Rosid View MSA
123739878 5271 Pentapetalae View MSA
122791925 5272 Eudicot View MSA
122046455 5273 Angiosperm View MSA
121344322 5274 Embryophyte View MSA
123425361 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.87569 0.0 27.5538   High
cufflinks 5.38225 0.0 24.3502    
cufflinks 4.98929 0.0 26.6511    
cufflinks 4.44283 0.0 21.2865    
cufflinks 4.64297 0.0 16.0182    
cufflinks 3.86348 0.0 14.0555   Low
cufflinks 4.82484 0.0 33.7888    
cufflinks 4.72207 0.0 25.143    
cufflinks 5.53606 0.0 21.0509    
cufflinks 0.311        
cufflinks 0.248       Low
cufflinks 0.411        
cufflinks 0.43        
cufflinks 0.532        
cufflinks 0.48        
cufflinks 0.491        
cufflinks 0.236       Low
cufflinks 0.447        
cufflinks 0.642       High
cufflinks 0.545        
cufflinks 0.346        
cufflinks 0.51        
cufflinks 0.526        
cufflinks 0.229       Low
cufflinks 0.565       High
cufflinks 0.292        

0 Strain