Gene : Glyma.12G213500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13270 - PROTEIN C20ORF116-RELATED Genomic Order:  2135
Name:  ? Glyma.12G213500 Secondary Identifier:  ? PAC:30547415
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G213500 0.5kb upstream 0.5kb upstream 5118 true Chr12: 37237816-37242933 Glycine max
Glyma.12G213500 0.5kb upstream 0.5kb upstream 500 false Chr12: 37242434-37242933 Glycine max
Glyma.12G213500 0.5kb downstream 0.5kb downstream 5118 true Chr12: 37237316-37242433 Glycine max
Glyma.12G213500 0.5kb downstream 0.5kb downstream 500 false Chr12: 37237316-37237815 Glycine max
Glyma.12G213500 1.0kb upstream 1.0kb upstream 5618 true Chr12: 37237816-37243433 Glycine max
Glyma.12G213500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 37242434-37243433 Glycine max
Glyma.12G213500 1.0kb downstream 1.0kb downstream 5618 true Chr12: 37236816-37242433 Glycine max
Glyma.12G213500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 37236816-37237815 Glycine max
Glyma.12G213500 2.0kb upstream 2.0kb upstream 6618 true Chr12: 37237816-37244433 Glycine max
Glyma.12G213500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 37242434-37244433 Glycine max
Glyma.12G213500 2.0kb downstream 2.0kb downstream 6618 true Chr12: 37235816-37242433 Glycine max
Glyma.12G213500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 37235816-37237815 Glycine max
Glyma.12G213500 5.0kb upstream 5.0kb upstream 9618 true Chr12: 37237816-37247433 Glycine max
Glyma.12G213500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 37242434-37247433 Glycine max
Glyma.12G213500 5.0kb downstream 5.0kb downstream 9618 true Chr12: 37232816-37242433 Glycine max
Glyma.12G213500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 37232816-37237815 Glycine max
Glyma.12G213500 10.0kb upstream 10.0kb upstream 14618 true Chr12: 37237816-37252433 Glycine max
Glyma.12G213500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 37242434-37252433 Glycine max
Glyma.12G213500 10.0kb downstream 10.0kb downstream 14618 true Chr12: 37227816-37242433 Glycine max
Glyma.12G213500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 37227816-37237815 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299765 5265 Fabidae View MSA
124064342 5270 Rosid View MSA
123740748 5271 Pentapetalae View MSA
122787568 5272 Eudicot View MSA
122042845 5273 Angiosperm View MSA
121345530 5274 Embryophyte View MSA
123425622 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.75837 0.0 19.0613    
cufflinks 6.12536 0.0 17.5094    
cufflinks 6.04739 0.0 17.3029    
cufflinks 8.09068 0.0 22.4143    
cufflinks 7.05506 0.0 19.7525    
cufflinks 6.79924 0.0 19.1648    
cufflinks 11.2596 0.0 30.4857   High
cufflinks 6.43627 0.0 18.2788    
cufflinks 6.92745 0.0 19.5095    
cufflinks 1.812       Low
cufflinks 2.021        
cufflinks 2.644       High
cufflinks 2.344        
cufflinks 2.912       High
cufflinks 2.531        
cufflinks 2.078        
cufflinks 1.443       Low
cufflinks 2.761       High
cufflinks 2.39        
cufflinks 2.17        
cufflinks 2.141        
cufflinks 2.138        
cufflinks 1.97        
cufflinks 2.108        
cufflinks 2.154        
cufflinks 2.23        

0 Strain