Gene : Glyma.12G098700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12124:SF41 - POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H FOLD PROTEIN WITH HRDC DOMAIN Genomic Order:  987
Name:  ? Glyma.12G098700 Secondary Identifier:  ? PAC:30547876
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G098700 0.5kb upstream 0.5kb upstream 11093 true Chr12: 8511061-8522153 Glycine max
Glyma.12G098700 0.5kb upstream 0.5kb upstream 500 false Chr12: 8511061-8511560 Glycine max
Glyma.12G098700 0.5kb downstream 0.5kb downstream 11093 true Chr12: 8511561-8522653 Glycine max
Glyma.12G098700 0.5kb downstream 0.5kb downstream 500 false Chr12: 8522154-8522653 Glycine max
Glyma.12G098700 1.0kb upstream 1.0kb upstream 11593 true Chr12: 8510561-8522153 Glycine max
Glyma.12G098700 1.0kb upstream 1.0kb upstream 1000 false Chr12: 8510561-8511560 Glycine max
Glyma.12G098700 1.0kb downstream 1.0kb downstream 11593 true Chr12: 8511561-8523153 Glycine max
Glyma.12G098700 1.0kb downstream 1.0kb downstream 1000 false Chr12: 8522154-8523153 Glycine max
Glyma.12G098700 2.0kb upstream 2.0kb upstream 12593 true Chr12: 8509561-8522153 Glycine max
Glyma.12G098700 2.0kb upstream 2.0kb upstream 2000 false Chr12: 8509561-8511560 Glycine max
Glyma.12G098700 2.0kb downstream 2.0kb downstream 12593 true Chr12: 8511561-8524153 Glycine max
Glyma.12G098700 2.0kb downstream 2.0kb downstream 2000 false Chr12: 8522154-8524153 Glycine max
Glyma.12G098700 5.0kb upstream 5.0kb upstream 15593 true Chr12: 8506561-8522153 Glycine max
Glyma.12G098700 5.0kb upstream 5.0kb upstream 5000 false Chr12: 8506561-8511560 Glycine max
Glyma.12G098700 5.0kb downstream 5.0kb downstream 15593 true Chr12: 8511561-8527153 Glycine max
Glyma.12G098700 5.0kb downstream 5.0kb downstream 5000 false Chr12: 8522154-8527153 Glycine max
Glyma.12G098700 10.0kb upstream 10.0kb upstream 20593 true Chr12: 8501561-8522153 Glycine max
Glyma.12G098700 10.0kb upstream 10.0kb upstream 10000 false Chr12: 8501561-8511560 Glycine max
Glyma.12G098700 10.0kb downstream 10.0kb downstream 20593 true Chr12: 8511561-8532153 Glycine max
Glyma.12G098700 10.0kb downstream 10.0kb downstream 10000 false Chr12: 8522154-8532153 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041407 5273 Angiosperm View MSA
122239887 5265 Fabidae Singleton cluster - no MSA
123985050 5270 Rosid Singleton cluster - no MSA
123742857 5271 Pentapetalae View MSA
122790052 5272 Eudicot View MSA
121343876 5274 Embryophyte View MSA
123426484 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.320641 0.0 1.19908   Low
cufflinks 1.92973 0.0 6.19323   High
cufflinks 1.41936 0.0 4.72706    
cufflinks 0.626639 0.0 2.25509    
cufflinks 1.13075 0.0 3.8853    
cufflinks 0.296668 0.0 1.11312   Low
cufflinks 0.544582 0.0 1.98225    
cufflinks 0.384856 0.0 1.42597    
cufflinks 1.20371 0.0 4.10561    
cufflinks 0.184        
cufflinks 0.092       Low
cufflinks 0.973       High
cufflinks 0.59        
cufflinks 1.022       High
cufflinks 0.172        
cufflinks 0.383        
cufflinks 0.072       Low
cufflinks 1.643       High
cufflinks 1.028       High
cufflinks 0.256        
cufflinks 0.074       Low
cufflinks 0.354        
cufflinks 0.519        
cufflinks 0.062       Low
cufflinks 0.324        
cufflinks 0.108        

0 Strain