Gene : Glyma.12G054400 G. max Wm82.a2.v1
Defline:  (1 of 26) PTHR10353//PTHR10353:SF81 - GLYCOSYL HYDROLASE Genomic Order:  544
Name:  ? Glyma.12G054400 Secondary Identifier:  ? PAC:30546029
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3121 Glycine max pathologic  
Gmax PWY-5176 Glycine max pathologic  
Gmax PWY-6002 Glycine max pathologic  
Gmax PWY-7089 Glycine max pathologic  
Gmax PWY-7091 Glycine max pathologic  
Gmax PWY-7092 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G054400 0.5kb upstream 0.5kb upstream 5566 true Chr12: 3931421-3936986 Glycine max
Glyma.12G054400 0.5kb upstream 0.5kb upstream 500 false Chr12: 3931421-3931920 Glycine max
Glyma.12G054400 0.5kb downstream 0.5kb downstream 5566 true Chr12: 3931921-3937486 Glycine max
Glyma.12G054400 0.5kb downstream 0.5kb downstream 500 false Chr12: 3936987-3937486 Glycine max
Glyma.12G054400 1.0kb upstream 1.0kb upstream 6066 true Chr12: 3930921-3936986 Glycine max
Glyma.12G054400 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3930921-3931920 Glycine max
Glyma.12G054400 1.0kb downstream 1.0kb downstream 6066 true Chr12: 3931921-3937986 Glycine max
Glyma.12G054400 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3936987-3937986 Glycine max
Glyma.12G054400 2.0kb upstream 2.0kb upstream 7066 true Chr12: 3929921-3936986 Glycine max
Glyma.12G054400 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3929921-3931920 Glycine max
Glyma.12G054400 2.0kb downstream 2.0kb downstream 7066 true Chr12: 3931921-3938986 Glycine max
Glyma.12G054400 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3936987-3938986 Glycine max
Glyma.12G054400 5.0kb upstream 5.0kb upstream 10066 true Chr12: 3926921-3936986 Glycine max
Glyma.12G054400 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3926921-3931920 Glycine max
Glyma.12G054400 5.0kb downstream 5.0kb downstream 10066 true Chr12: 3931921-3941986 Glycine max
Glyma.12G054400 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3936987-3941986 Glycine max
Glyma.12G054400 10.0kb upstream 10.0kb upstream 15066 true Chr12: 3921921-3936986 Glycine max
Glyma.12G054400 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3921921-3931920 Glycine max
Glyma.12G054400 10.0kb downstream 10.0kb downstream 15066 true Chr12: 3931921-3946986 Glycine max
Glyma.12G054400 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3936987-3946986 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305803 5265 Fabidae View MSA
124036665 5270 Rosid View MSA
123753517 5271 Pentapetalae View MSA
122797747 5272 Eudicot View MSA
122051599 5273 Angiosperm View MSA
121350182 5274 Embryophyte View MSA
123428830 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.69101 0.0 24.0218    
cufflinks 7.28964 0.0 23.8707    
cufflinks 3.73202 0.0 15.8984    
cufflinks 8.51285 0.0 33.0772   High
cufflinks 2.4445 0.0 12.4173   Low
cufflinks 2.3003 0.0 8.02134   Low
cufflinks 7.65977 0.0 30.1506   High
cufflinks 5.16496 0.0 18.257    
cufflinks 2.75836 0.0 12.9125    
cufflinks 1.044        
cufflinks 0.027     Low Low
cufflinks 1.075        
cufflinks 0.378        
cufflinks 0.62        
cufflinks 0.265        
cufflinks 1.4        
cufflinks 0.222        
cufflinks 1.507        
cufflinks 1.239        
cufflinks 1.542        
cufflinks 0.102       Low
cufflinks 1.732        
cufflinks 1.569        
cufflinks 0.044     Low Low
cufflinks 1.423        
cufflinks 0.166        

0 Strain