Gene : Glyma.12G027800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  278
Name:  ? Glyma.12G027800 Secondary Identifier:  ? PAC:30546294
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G027800 0.5kb upstream 0.5kb upstream 16768 true Chr12: 2056261-2073028 Glycine max
Glyma.12G027800 0.5kb upstream 0.5kb upstream 500 false Chr12: 2072529-2073028 Glycine max
Glyma.12G027800 0.5kb downstream 0.5kb downstream 16768 true Chr12: 2055761-2072528 Glycine max
Glyma.12G027800 0.5kb downstream 0.5kb downstream 500 false Chr12: 2055761-2056260 Glycine max
Glyma.12G027800 1.0kb upstream 1.0kb upstream 17268 true Chr12: 2056261-2073528 Glycine max
Glyma.12G027800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 2072529-2073528 Glycine max
Glyma.12G027800 1.0kb downstream 1.0kb downstream 17268 true Chr12: 2055261-2072528 Glycine max
Glyma.12G027800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 2055261-2056260 Glycine max
Glyma.12G027800 2.0kb upstream 2.0kb upstream 18268 true Chr12: 2056261-2074528 Glycine max
Glyma.12G027800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 2072529-2074528 Glycine max
Glyma.12G027800 2.0kb downstream 2.0kb downstream 18268 true Chr12: 2054261-2072528 Glycine max
Glyma.12G027800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 2054261-2056260 Glycine max
Glyma.12G027800 5.0kb upstream 5.0kb upstream 21268 true Chr12: 2056261-2077528 Glycine max
Glyma.12G027800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 2072529-2077528 Glycine max
Glyma.12G027800 5.0kb downstream 5.0kb downstream 21268 true Chr12: 2051261-2072528 Glycine max
Glyma.12G027800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 2051261-2056260 Glycine max
Glyma.12G027800 10.0kb upstream 10.0kb upstream 26268 true Chr12: 2056261-2082528 Glycine max
Glyma.12G027800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 2072529-2082528 Glycine max
Glyma.12G027800 10.0kb downstream 10.0kb downstream 26268 true Chr12: 2046261-2072528 Glycine max
Glyma.12G027800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 2046261-2056260 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121611620 5273 Angiosperm Singleton cluster - no MSA
122244823 5265 Fabidae Singleton cluster - no MSA
123989068 5270 Rosid Singleton cluster - no MSA
123564204 5271 Pentapetalae Singleton cluster - no MSA
122598974 5272 Eudicot Singleton cluster - no MSA
120883851 5274 Embryophyte Singleton cluster - no MSA
122924664 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.90471 0.0 15.9761   High
cufflinks 2.28689 0.0 6.79258    
cufflinks 7.26381 0.0 19.4568   High
cufflinks 2.59168 0.0 7.55912    
cufflinks 2.51758 0.0 7.38598    
cufflinks 3.05711 0.0 8.74301    
cufflinks 1.18693 0.0 3.87087   Low
cufflinks 2.80252 0.0 8.0971    
cufflinks 2.42131 0.0 7.13281    
cufflinks 0.975       Low
cufflinks 1.039       Low
cufflinks 1.778        
cufflinks 1.232        
cufflinks 1.303        
cufflinks 0.831       Low
cufflinks 1.997       High
cufflinks 1.23        
cufflinks 1.484        
cufflinks 1.474        
cufflinks 2.132       High
cufflinks 1.143        
cufflinks 2.322       High
cufflinks 1.584        
cufflinks 1.234        
cufflinks 1.871        
cufflinks 1.861        

0 Strain