Gene : Glyma.12G003300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15856//PTHR15856:SF28 - PHD FINGER PROTEIN 20-RELATED Genomic Order:  33
Name:  ? Glyma.12G003300 Secondary Identifier:  ? PAC:30546776
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G003300 0.5kb upstream 0.5kb upstream 4813 true Chr12: 272583-277395 Glycine max
Glyma.12G003300 0.5kb upstream 0.5kb upstream 500 false Chr12: 276896-277395 Glycine max
Glyma.12G003300 0.5kb downstream 0.5kb downstream 4813 true Chr12: 272083-276895 Glycine max
Glyma.12G003300 0.5kb downstream 0.5kb downstream 500 false Chr12: 272083-272582 Glycine max
Glyma.12G003300 1.0kb upstream 1.0kb upstream 5313 true Chr12: 272583-277895 Glycine max
Glyma.12G003300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 276896-277895 Glycine max
Glyma.12G003300 1.0kb downstream 1.0kb downstream 5313 true Chr12: 271583-276895 Glycine max
Glyma.12G003300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 271583-272582 Glycine max
Glyma.12G003300 2.0kb upstream 2.0kb upstream 6313 true Chr12: 272583-278895 Glycine max
Glyma.12G003300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 276896-278895 Glycine max
Glyma.12G003300 2.0kb downstream 2.0kb downstream 6313 true Chr12: 270583-276895 Glycine max
Glyma.12G003300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 270583-272582 Glycine max
Glyma.12G003300 5.0kb upstream 5.0kb upstream 9313 true Chr12: 272583-281895 Glycine max
Glyma.12G003300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 276896-281895 Glycine max
Glyma.12G003300 5.0kb downstream 5.0kb downstream 9313 true Chr12: 267583-276895 Glycine max
Glyma.12G003300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 267583-272582 Glycine max
Glyma.12G003300 10.0kb upstream 10.0kb upstream 14313 true Chr12: 272583-286895 Glycine max
Glyma.12G003300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 276896-286895 Glycine max
Glyma.12G003300 10.0kb downstream 10.0kb downstream 14313 true Chr12: 262583-276895 Glycine max
Glyma.12G003300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 262583-272582 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306057 5265 Fabidae View MSA
124069901 5270 Rosid View MSA
123741706 5271 Pentapetalae View MSA
122793317 5272 Eudicot View MSA
122047427 5273 Angiosperm View MSA
121310739 5274 Embryophyte View MSA
123348151 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.91451 0.0 13.3691    
cufflinks 6.8175 0.0 18.2686   High
cufflinks 4.27165 0.0 11.7164    
cufflinks 4.40097 0.0 12.0646    
cufflinks 4.65492 0.0 12.7104    
cufflinks 2.89692 0.0 8.24872   Low
cufflinks 5.07711 0.0 13.7964    
cufflinks 3.94055 0.0 10.8906    
cufflinks 3.70671 0.0 10.2948    
cufflinks 1.474        
cufflinks 0.949       Low
cufflinks 4.316        
cufflinks 1.971        
cufflinks 2.676        
cufflinks 0.822       Low
cufflinks 3.409        
cufflinks 1.302        
cufflinks 4.593        
cufflinks 6.944       High
cufflinks 4.587        
cufflinks 0.792       Low
cufflinks 4.338        
cufflinks 4.861       High
cufflinks 1.311        
cufflinks 3.462        
cufflinks 0.737       Low

0 Strain