Gene : Glyma.11G254200 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2542
Name:  ? Glyma.11G254200 Secondary Identifier:  ? PAC:30529745
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G254200 0.5kb upstream 0.5kb upstream 3113 true Chr11: 34476450-34479562 Glycine max
Glyma.11G254200 0.5kb upstream 0.5kb upstream 500 false Chr11: 34479063-34479562 Glycine max
Glyma.11G254200 0.5kb downstream 0.5kb downstream 3113 true Chr11: 34475950-34479062 Glycine max
Glyma.11G254200 0.5kb downstream 0.5kb downstream 500 false Chr11: 34475950-34476449 Glycine max
Glyma.11G254200 1.0kb upstream 1.0kb upstream 3613 true Chr11: 34476450-34480062 Glycine max
Glyma.11G254200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 34479063-34480062 Glycine max
Glyma.11G254200 1.0kb downstream 1.0kb downstream 3613 true Chr11: 34475450-34479062 Glycine max
Glyma.11G254200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 34475450-34476449 Glycine max
Glyma.11G254200 2.0kb upstream 2.0kb upstream 4613 true Chr11: 34476450-34481062 Glycine max
Glyma.11G254200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 34479063-34481062 Glycine max
Glyma.11G254200 2.0kb downstream 2.0kb downstream 4613 true Chr11: 34474450-34479062 Glycine max
Glyma.11G254200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 34474450-34476449 Glycine max
Glyma.11G254200 5.0kb upstream 5.0kb upstream 7613 true Chr11: 34476450-34484062 Glycine max
Glyma.11G254200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 34479063-34484062 Glycine max
Glyma.11G254200 5.0kb downstream 5.0kb downstream 7613 true Chr11: 34471450-34479062 Glycine max
Glyma.11G254200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 34471450-34476449 Glycine max
Glyma.11G254200 10.0kb upstream 10.0kb upstream 12613 true Chr11: 34476450-34489062 Glycine max
Glyma.11G254200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 34479063-34489062 Glycine max
Glyma.11G254200 10.0kb downstream 10.0kb downstream 12613 true Chr11: 34466450-34479062 Glycine max
Glyma.11G254200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 34466450-34476449 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026319 5273 Angiosperm View MSA
122300758 5265 Fabidae View MSA
124064150 5270 Rosid View MSA
123738212 5271 Pentapetalae View MSA
122786215 5272 Eudicot View MSA
121296277 5274 Embryophyte View MSA
123334471 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.98459 0.0 6.25745   High
cufflinks 0.700147 0.0 2.48476    
cufflinks 0.792707 0.0 2.78397    
cufflinks 0.969197 0.0 3.34563    
cufflinks 1.06312 0.0 3.63311    
cufflinks 0.496498 0.0 1.80223   Low
cufflinks 1.32402 0.0 4.415    
cufflinks 0.816132 0.0 2.86205    
cufflinks 1.09518 0.0 3.72862    
cufflinks 0.352        
cufflinks 0.381        
cufflinks 1.035       High
cufflinks 0.895       High
cufflinks 1.383       High
cufflinks 0.316        
cufflinks 0.523        
cufflinks 0.473        
cufflinks 0.93       High
cufflinks 0.908       High
cufflinks 0.439        
cufflinks 0.173       Low
cufflinks 0.384        
cufflinks 0.489        
cufflinks 0.354        
cufflinks 0.4        
cufflinks 0.275       Low

0 Strain