Gene : Glyma.11G165700 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  1657
Name:  ? Glyma.11G165700 Secondary Identifier:  ? PAC:30528441
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G165700 0.5kb upstream 0.5kb upstream 1817 true Chr11: 15819726-15821542 Glycine max
Glyma.11G165700 0.5kb upstream 0.5kb upstream 500 false Chr11: 15821043-15821542 Glycine max
Glyma.11G165700 0.5kb downstream 0.5kb downstream 1817 true Chr11: 15819226-15821042 Glycine max
Glyma.11G165700 0.5kb downstream 0.5kb downstream 500 false Chr11: 15819226-15819725 Glycine max
Glyma.11G165700 1.0kb upstream 1.0kb upstream 2317 true Chr11: 15819726-15822042 Glycine max
Glyma.11G165700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15821043-15822042 Glycine max
Glyma.11G165700 1.0kb downstream 1.0kb downstream 2317 true Chr11: 15818726-15821042 Glycine max
Glyma.11G165700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15818726-15819725 Glycine max
Glyma.11G165700 2.0kb upstream 2.0kb upstream 3317 true Chr11: 15819726-15823042 Glycine max
Glyma.11G165700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15821043-15823042 Glycine max
Glyma.11G165700 2.0kb downstream 2.0kb downstream 3317 true Chr11: 15817726-15821042 Glycine max
Glyma.11G165700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15817726-15819725 Glycine max
Glyma.11G165700 5.0kb upstream 5.0kb upstream 6317 true Chr11: 15819726-15826042 Glycine max
Glyma.11G165700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15821043-15826042 Glycine max
Glyma.11G165700 5.0kb downstream 5.0kb downstream 6317 true Chr11: 15814726-15821042 Glycine max
Glyma.11G165700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15814726-15819725 Glycine max
Glyma.11G165700 10.0kb upstream 10.0kb upstream 11317 true Chr11: 15819726-15831042 Glycine max
Glyma.11G165700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15821043-15831042 Glycine max
Glyma.11G165700 10.0kb downstream 10.0kb downstream 11317 true Chr11: 15809726-15821042 Glycine max
Glyma.11G165700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15809726-15819725 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.14957 0.0 4.11516   Low
cufflinks 1.61871 0.0 5.65124    
cufflinks 1.86396 0.0 6.43829    
cufflinks 6.23466 0.0 18.2512   High
cufflinks 2.86423 0.0 9.30376    
cufflinks 2.81241 0.0 9.19769    
cufflinks 8.95011 0.0 25.0386   High
cufflinks 2.63225 0.0 8.67011    
cufflinks 4.06765 0.0 12.6088    
cufflinks 1.054        
cufflinks 0.4        
cufflinks 1.617        
cufflinks 2.462       High
cufflinks 0.396        
cufflinks 0.377        
cufflinks 1.755       High
cufflinks 0.121       Low
cufflinks 0.993        
cufflinks 1.12        
cufflinks 1.121        
cufflinks 0.269       Low
cufflinks 1.302        
cufflinks 1.075        
cufflinks 0.549        
cufflinks 1.496        
cufflinks 0.324       Low

0 Strain