Gene : Glyma.11G045200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31908:SF2 - NUCLEAR MATRIX CONSTITUENT PROTEIN 1-LIKE PROTEIN-RELATED Genomic Order:  452
Name:  ? Glyma.11G045200 Secondary Identifier:  ? PAC:30529012
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G045200 0.5kb upstream 0.5kb upstream 4281 true Chr11: 3336858-3341138 Glycine max
Glyma.11G045200 0.5kb upstream 0.5kb upstream 500 false Chr11: 3336858-3337357 Glycine max
Glyma.11G045200 0.5kb downstream 0.5kb downstream 4281 true Chr11: 3337358-3341638 Glycine max
Glyma.11G045200 0.5kb downstream 0.5kb downstream 500 false Chr11: 3341139-3341638 Glycine max
Glyma.11G045200 1.0kb upstream 1.0kb upstream 4781 true Chr11: 3336358-3341138 Glycine max
Glyma.11G045200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3336358-3337357 Glycine max
Glyma.11G045200 1.0kb downstream 1.0kb downstream 4781 true Chr11: 3337358-3342138 Glycine max
Glyma.11G045200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3341139-3342138 Glycine max
Glyma.11G045200 2.0kb upstream 2.0kb upstream 5781 true Chr11: 3335358-3341138 Glycine max
Glyma.11G045200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3335358-3337357 Glycine max
Glyma.11G045200 2.0kb downstream 2.0kb downstream 5781 true Chr11: 3337358-3343138 Glycine max
Glyma.11G045200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3341139-3343138 Glycine max
Glyma.11G045200 5.0kb upstream 5.0kb upstream 8781 true Chr11: 3332358-3341138 Glycine max
Glyma.11G045200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3332358-3337357 Glycine max
Glyma.11G045200 5.0kb downstream 5.0kb downstream 8781 true Chr11: 3337358-3346138 Glycine max
Glyma.11G045200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3341139-3346138 Glycine max
Glyma.11G045200 10.0kb upstream 10.0kb upstream 13781 true Chr11: 3327358-3341138 Glycine max
Glyma.11G045200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3327358-3337357 Glycine max
Glyma.11G045200 10.0kb downstream 10.0kb downstream 13781 true Chr11: 3337358-3351138 Glycine max
Glyma.11G045200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3341139-3351138 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306162 5265 Fabidae View MSA
124068788 5270 Rosid View MSA
123740792 5271 Pentapetalae View MSA
122790412 5272 Eudicot View MSA
122047030 5273 Angiosperm View MSA
121346070 5274 Embryophyte View MSA
123380319 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0214196 0.0 0.088823 Low  
cufflinks 0.0357555 0.0 0.144109 Low  
cufflinks 0.136354 0.0 0.521833 Low High
cufflinks 0.0766327 0.0 0.300973 Low  
cufflinks 0.0139553 0.0 0.0598057 Low Low
cufflinks 0.0404942 0.0 0.162968 Low  
cufflinks 0.0288206 0.0 0.117457 Low  
cufflinks 0.0519878 0.0 0.206943 Low  
cufflinks 0.671       High
cufflinks 0.011     Low  
cufflinks 0.358       High
cufflinks 0.046     Low  
cufflinks 0.003     Low Low
cufflinks 0.03     Low  
cufflinks 0.079     Low  
cufflinks 0.073        
cufflinks 0.252        
cufflinks 0.773       High
cufflinks 0.024     Low  
cufflinks 0.012     Low  
cufflinks 0.023     Low  
cufflinks 0.45       High
cufflinks 0.015     Low  
cufflinks 0.014     Low  
cufflinks 0.038     Low  

0 Strain