Gene : Glyma.11G043900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED Genomic Order:  439
Name:  ? Glyma.11G043900 Secondary Identifier:  ? PAC:30530142
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLUCONEO-PWY Glycine max pathologic  
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-7115 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G043900 0.5kb upstream 0.5kb upstream 4592 true Chr11: 3252904-3257495 Glycine max
Glyma.11G043900 0.5kb upstream 0.5kb upstream 500 false Chr11: 3256996-3257495 Glycine max
Glyma.11G043900 0.5kb downstream 0.5kb downstream 4592 true Chr11: 3252404-3256995 Glycine max
Glyma.11G043900 0.5kb downstream 0.5kb downstream 500 false Chr11: 3252404-3252903 Glycine max
Glyma.11G043900 1.0kb upstream 1.0kb upstream 5092 true Chr11: 3252904-3257995 Glycine max
Glyma.11G043900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3256996-3257995 Glycine max
Glyma.11G043900 1.0kb downstream 1.0kb downstream 5092 true Chr11: 3251904-3256995 Glycine max
Glyma.11G043900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3251904-3252903 Glycine max
Glyma.11G043900 2.0kb upstream 2.0kb upstream 6092 true Chr11: 3252904-3258995 Glycine max
Glyma.11G043900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3256996-3258995 Glycine max
Glyma.11G043900 2.0kb downstream 2.0kb downstream 6092 true Chr11: 3250904-3256995 Glycine max
Glyma.11G043900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3250904-3252903 Glycine max
Glyma.11G043900 5.0kb upstream 5.0kb upstream 9092 true Chr11: 3252904-3261995 Glycine max
Glyma.11G043900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3256996-3261995 Glycine max
Glyma.11G043900 5.0kb downstream 5.0kb downstream 9092 true Chr11: 3247904-3256995 Glycine max
Glyma.11G043900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3247904-3252903 Glycine max
Glyma.11G043900 10.0kb upstream 10.0kb upstream 14092 true Chr11: 3252904-3266995 Glycine max
Glyma.11G043900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3256996-3266995 Glycine max
Glyma.11G043900 10.0kb downstream 10.0kb downstream 14092 true Chr11: 3242904-3256995 Glycine max
Glyma.11G043900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3242904-3252903 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313107 5265 Fabidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.4338 0.0 33.5412   Low
cufflinks 14.1424 0.0 37.9666   Low
cufflinks 53.0253 0.0 149.105 High High
cufflinks 21.9508 0.0 58.5885 High  
cufflinks 21.2699 0.0 56.7639 High  
cufflinks 55.6607 0.0 157.598 High High
cufflinks 19.5377 0.0 52.1244    
cufflinks 20.0138 0.0 53.3945    
cufflinks 25.4723 0.0 68.1822 High  
cufflinks 5.974        
cufflinks 9.503     High  
cufflinks 14.33     High High
cufflinks 8.218     High  
cufflinks 6.362        
cufflinks 3.366        
cufflinks 3.493        
cufflinks 7.476     High  
cufflinks 9.273     High  
cufflinks 5.304        
cufflinks 2.652       Low
cufflinks 8.506     High  
cufflinks 3.137       Low
cufflinks 3.086       Low
cufflinks 14.054     High High
cufflinks 2.604       Low
cufflinks 10.461     High  

0 Strain