Gene : Glyma.11G006200 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  62
Name:  ? Glyma.11G006200 Secondary Identifier:  ? PAC:30527773
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G006200 0.5kb upstream 0.5kb upstream 2950 true Chr11: 438736-441685 Glycine max
Glyma.11G006200 0.5kb upstream 0.5kb upstream 500 false Chr11: 438736-439235 Glycine max
Glyma.11G006200 0.5kb downstream 0.5kb downstream 2950 true Chr11: 439236-442185 Glycine max
Glyma.11G006200 0.5kb downstream 0.5kb downstream 500 false Chr11: 441686-442185 Glycine max
Glyma.11G006200 1.0kb upstream 1.0kb upstream 3450 true Chr11: 438236-441685 Glycine max
Glyma.11G006200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 438236-439235 Glycine max
Glyma.11G006200 1.0kb downstream 1.0kb downstream 3450 true Chr11: 439236-442685 Glycine max
Glyma.11G006200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 441686-442685 Glycine max
Glyma.11G006200 2.0kb upstream 2.0kb upstream 4450 true Chr11: 437236-441685 Glycine max
Glyma.11G006200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 437236-439235 Glycine max
Glyma.11G006200 2.0kb downstream 2.0kb downstream 4450 true Chr11: 439236-443685 Glycine max
Glyma.11G006200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 441686-443685 Glycine max
Glyma.11G006200 5.0kb upstream 5.0kb upstream 7450 true Chr11: 434236-441685 Glycine max
Glyma.11G006200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 434236-439235 Glycine max
Glyma.11G006200 5.0kb downstream 5.0kb downstream 7450 true Chr11: 439236-446685 Glycine max
Glyma.11G006200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 441686-446685 Glycine max
Glyma.11G006200 10.0kb upstream 10.0kb upstream 12450 true Chr11: 429236-441685 Glycine max
Glyma.11G006200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 429236-439235 Glycine max
Glyma.11G006200 10.0kb downstream 10.0kb downstream 12450 true Chr11: 439236-451685 Glycine max
Glyma.11G006200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 441686-451685 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300254 5265 Fabidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.54491 0.0 5.11283   High
cufflinks 0.760906 0.0 2.70295    
cufflinks 0.424404 0.0 1.56249   Low
cufflinks 0.57241 0.0 2.07366    
cufflinks 0.685481 0.0 2.45459    
cufflinks 0.367551 0.0 1.36445   Low
cufflinks 0.746914 0.0 2.65932    
cufflinks 0.553454 0.0 2.00969    
cufflinks 0.690081 0.0 2.468    
cufflinks 0.313        
cufflinks 0.138       Low
cufflinks 0.613        
cufflinks 0.6        
cufflinks 0.873       High
cufflinks 0.272        
cufflinks 0.627        
cufflinks 0.333        
cufflinks 0.597        
cufflinks 0.62        
cufflinks 0.428        
cufflinks 0.157       Low
cufflinks 0.584        
cufflinks 0.79       High
cufflinks 0.163       Low
cufflinks 0.655        
cufflinks 0.186       Low

0 Strain