Gene : Glyma.10G176200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15856//PTHR15856:SF29 - PHD FINGER PROTEIN 20-RELATED Genomic Order:  1762
Name:  ? Glyma.10G176200 Secondary Identifier:  ? PAC:30475957
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G176200 0.5kb upstream 0.5kb upstream 5268 true Chr10: 40995307-41000574 Glycine max
Glyma.10G176200 0.5kb upstream 0.5kb upstream 500 false Chr10: 41000075-41000574 Glycine max
Glyma.10G176200 0.5kb downstream 0.5kb downstream 5268 true Chr10: 40994807-41000074 Glycine max
Glyma.10G176200 0.5kb downstream 0.5kb downstream 500 false Chr10: 40994807-40995306 Glycine max
Glyma.10G176200 1.0kb upstream 1.0kb upstream 5768 true Chr10: 40995307-41001074 Glycine max
Glyma.10G176200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 41000075-41001074 Glycine max
Glyma.10G176200 1.0kb downstream 1.0kb downstream 5768 true Chr10: 40994307-41000074 Glycine max
Glyma.10G176200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40994307-40995306 Glycine max
Glyma.10G176200 2.0kb upstream 2.0kb upstream 6768 true Chr10: 40995307-41002074 Glycine max
Glyma.10G176200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 41000075-41002074 Glycine max
Glyma.10G176200 2.0kb downstream 2.0kb downstream 6768 true Chr10: 40993307-41000074 Glycine max
Glyma.10G176200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40993307-40995306 Glycine max
Glyma.10G176200 5.0kb upstream 5.0kb upstream 9768 true Chr10: 40995307-41005074 Glycine max
Glyma.10G176200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 41000075-41005074 Glycine max
Glyma.10G176200 5.0kb downstream 5.0kb downstream 9768 true Chr10: 40990307-41000074 Glycine max
Glyma.10G176200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40990307-40995306 Glycine max
Glyma.10G176200 10.0kb upstream 10.0kb upstream 14768 true Chr10: 40995307-41010074 Glycine max
Glyma.10G176200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 41000075-41010074 Glycine max
Glyma.10G176200 10.0kb downstream 10.0kb downstream 14768 true Chr10: 40985307-41000074 Glycine max
Glyma.10G176200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40985307-40995306 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303151 5265 Fabidae View MSA
124069901 5270 Rosid View MSA
123741706 5271 Pentapetalae View MSA
122793317 5272 Eudicot View MSA
122047427 5273 Angiosperm View MSA
121310739 5274 Embryophyte View MSA
123348151 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0733 0.0 43.0826    
cufflinks 7.12701 0.0 26.9497   Low
cufflinks 31.2456 0.0 122.205 High High
cufflinks 16.0072 0.0 57.0564    
cufflinks 11.3458 0.0 42.2    
cufflinks 15.9921 0.0 56.2863    
cufflinks 15.4294 0.0 55.2172    
cufflinks 12.0725 0.0 42.8994    
cufflinks 8.56995 0.0 34.2396   Low
cufflinks 2.091        
cufflinks 4.941       High
cufflinks 4.877       High
cufflinks 1.734       Low
cufflinks 1.65       Low
cufflinks 8.66     High High
cufflinks 2.596        
cufflinks 3.051        
cufflinks 2.47        
cufflinks 2.21        
cufflinks 3.252        
cufflinks 3.811        
cufflinks 2.419        
cufflinks 2.096        
cufflinks 3.577        
cufflinks 2.837        
cufflinks 4.338        

0 Strain