Gene : Glyma.10G077900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12300//PTHR12300:SF44 - HVA22-LIKE PROTEINS Genomic Order:  779
Name:  ? Glyma.10G077900 Secondary Identifier:  ? PAC:30474646
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G077900 0.5kb upstream 0.5kb upstream 4553 true Chr10: 8689716-8694268 Glycine max
Glyma.10G077900 0.5kb upstream 0.5kb upstream 500 false Chr10: 8689716-8690215 Glycine max
Glyma.10G077900 0.5kb downstream 0.5kb downstream 4553 true Chr10: 8690216-8694768 Glycine max
Glyma.10G077900 0.5kb downstream 0.5kb downstream 500 false Chr10: 8694269-8694768 Glycine max
Glyma.10G077900 1.0kb upstream 1.0kb upstream 5053 true Chr10: 8689216-8694268 Glycine max
Glyma.10G077900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 8689216-8690215 Glycine max
Glyma.10G077900 1.0kb downstream 1.0kb downstream 5053 true Chr10: 8690216-8695268 Glycine max
Glyma.10G077900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 8694269-8695268 Glycine max
Glyma.10G077900 2.0kb upstream 2.0kb upstream 6053 true Chr10: 8688216-8694268 Glycine max
Glyma.10G077900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 8688216-8690215 Glycine max
Glyma.10G077900 2.0kb downstream 2.0kb downstream 6053 true Chr10: 8690216-8696268 Glycine max
Glyma.10G077900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 8694269-8696268 Glycine max
Glyma.10G077900 5.0kb upstream 5.0kb upstream 9053 true Chr10: 8685216-8694268 Glycine max
Glyma.10G077900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 8685216-8690215 Glycine max
Glyma.10G077900 5.0kb downstream 5.0kb downstream 9053 true Chr10: 8690216-8699268 Glycine max
Glyma.10G077900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 8694269-8699268 Glycine max
Glyma.10G077900 10.0kb upstream 10.0kb upstream 14053 true Chr10: 8680216-8694268 Glycine max
Glyma.10G077900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 8680216-8690215 Glycine max
Glyma.10G077900 10.0kb downstream 10.0kb downstream 14053 true Chr10: 8690216-8704268 Glycine max
Glyma.10G077900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 8694269-8704268 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314306 5265 Fabidae View MSA
124074738 5270 Rosid View MSA
123753523 5271 Pentapetalae View MSA
122794920 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.07255 0.0 3.8513    
cufflinks 0.417359 0.0 1.57768    
cufflinks 83.2686 0.0 241.275 High High
cufflinks 0.596594 0.0 2.21708    
cufflinks 0.707276 0.0 2.60266    
cufflinks 23.027 0.0 61.4364 High High
cufflinks 0.0140698 0.0 0.0644427 Low Low
cufflinks 1.70615 0.0 5.89816    
cufflinks 0.615568 0.0 2.28299    
cufflinks 0.828        
cufflinks 0.179        
cufflinks 5.088       High
cufflinks 0.48        
cufflinks 0.102        
cufflinks 0.005     Low Low
cufflinks 0.162        
cufflinks 0.201        
cufflinks 3.999       High
cufflinks 0.083     Low  
cufflinks 0.277        
cufflinks 0.206        
cufflinks 0.206        
cufflinks 0.142        
cufflinks 0.067        
cufflinks 0.183        
cufflinks 0.182        

0 Strain