Gene : Glyma.08G307900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Genomic Order:  3079
Name:  ? Glyma.08G307900 Secondary Identifier:  ? PAC:30536672
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G307900 0.5kb upstream 0.5kb upstream 9277 true Chr08: 42615491-42624767 Glycine max
Glyma.08G307900 0.5kb upstream 0.5kb upstream 500 false Chr08: 42624268-42624767 Glycine max
Glyma.08G307900 0.5kb downstream 0.5kb downstream 9277 true Chr08: 42614991-42624267 Glycine max
Glyma.08G307900 0.5kb downstream 0.5kb downstream 500 false Chr08: 42614991-42615490 Glycine max
Glyma.08G307900 1.0kb upstream 1.0kb upstream 9777 true Chr08: 42615491-42625267 Glycine max
Glyma.08G307900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 42624268-42625267 Glycine max
Glyma.08G307900 1.0kb downstream 1.0kb downstream 9777 true Chr08: 42614491-42624267 Glycine max
Glyma.08G307900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 42614491-42615490 Glycine max
Glyma.08G307900 2.0kb upstream 2.0kb upstream 10777 true Chr08: 42615491-42626267 Glycine max
Glyma.08G307900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 42624268-42626267 Glycine max
Glyma.08G307900 2.0kb downstream 2.0kb downstream 10777 true Chr08: 42613491-42624267 Glycine max
Glyma.08G307900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 42613491-42615490 Glycine max
Glyma.08G307900 5.0kb upstream 5.0kb upstream 13777 true Chr08: 42615491-42629267 Glycine max
Glyma.08G307900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 42624268-42629267 Glycine max
Glyma.08G307900 5.0kb downstream 5.0kb downstream 13777 true Chr08: 42610491-42624267 Glycine max
Glyma.08G307900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 42610491-42615490 Glycine max
Glyma.08G307900 10.0kb upstream 10.0kb upstream 18777 true Chr08: 42615491-42634267 Glycine max
Glyma.08G307900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 42624268-42634267 Glycine max
Glyma.08G307900 10.0kb downstream 10.0kb downstream 18777 true Chr08: 42605491-42624267 Glycine max
Glyma.08G307900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 42605491-42615490 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307893 5265 Fabidae View MSA
124062842 5270 Rosid View MSA
123745569 5271 Pentapetalae View MSA
122788117 5272 Eudicot View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.12817 0.0 8.92169    
cufflinks 3.37771 0.0 9.56784    
cufflinks 2.75659 0.0 8.00889    
cufflinks 4.18601 0.0 11.6057    
cufflinks 3.50666 0.0 9.85268    
cufflinks 2.67213 0.0 7.75592   Low
cufflinks 3.21852 0.0 9.14651    
cufflinks 5.33752 0.0 14.5281   High
cufflinks 3.1114 0.0 8.87306    
cufflinks 1.567       High
cufflinks 0.567       Low
cufflinks 0.989        
cufflinks 1.25        
cufflinks 1.128        
cufflinks 1.04        
cufflinks 1.126        
cufflinks 0.534       Low
cufflinks 1.259        
cufflinks 1.391       High
cufflinks 1.232        
cufflinks 0.832        
cufflinks 1.262        
cufflinks 1.104        
cufflinks 0.722       Low
cufflinks 1.156        
cufflinks 0.626       Low

0 Strain