Gene : Glyma.08G158400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23070//PTHR23070:SF43 - BCS1 AAA-TYPE ATPASE Genomic Order:  1584
Name:  ? Glyma.08G158400 Secondary Identifier:  ? PAC:30537149
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G158400 0.5kb upstream 0.5kb upstream 2259 true Chr08: 12264351-12266609 Glycine max
Glyma.08G158400 0.5kb upstream 0.5kb upstream 500 false Chr08: 12266110-12266609 Glycine max
Glyma.08G158400 0.5kb downstream 0.5kb downstream 2259 true Chr08: 12263851-12266109 Glycine max
Glyma.08G158400 0.5kb downstream 0.5kb downstream 500 false Chr08: 12263851-12264350 Glycine max
Glyma.08G158400 1.0kb upstream 1.0kb upstream 2759 true Chr08: 12264351-12267109 Glycine max
Glyma.08G158400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 12266110-12267109 Glycine max
Glyma.08G158400 1.0kb downstream 1.0kb downstream 2759 true Chr08: 12263351-12266109 Glycine max
Glyma.08G158400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 12263351-12264350 Glycine max
Glyma.08G158400 2.0kb upstream 2.0kb upstream 3759 true Chr08: 12264351-12268109 Glycine max
Glyma.08G158400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 12266110-12268109 Glycine max
Glyma.08G158400 2.0kb downstream 2.0kb downstream 3759 true Chr08: 12262351-12266109 Glycine max
Glyma.08G158400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 12262351-12264350 Glycine max
Glyma.08G158400 5.0kb upstream 5.0kb upstream 6759 true Chr08: 12264351-12271109 Glycine max
Glyma.08G158400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 12266110-12271109 Glycine max
Glyma.08G158400 5.0kb downstream 5.0kb downstream 6759 true Chr08: 12259351-12266109 Glycine max
Glyma.08G158400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 12259351-12264350 Glycine max
Glyma.08G158400 10.0kb upstream 10.0kb upstream 11759 true Chr08: 12264351-12276109 Glycine max
Glyma.08G158400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 12266110-12276109 Glycine max
Glyma.08G158400 10.0kb downstream 10.0kb downstream 11759 true Chr08: 12254351-12266109 Glycine max
Glyma.08G158400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 12254351-12264350 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122240348 5265 Fabidae Singleton cluster - no MSA
123985427 5270 Rosid Singleton cluster - no MSA
123560856 5271 Pentapetalae Singleton cluster - no MSA
122796053 5272 Eudicot View MSA
122051618 5273 Angiosperm View MSA
121350294 5274 Embryophyte View MSA
123428466 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.67765 0.0 8.42632    
cufflinks 2.75819 0.0 8.71079    
cufflinks 1.78484 0.0 6.01416   Low
cufflinks 2.63769 0.0 8.36577    
cufflinks 2.8309 0.0 8.75838    
cufflinks 1.52976 0.0 5.18159   Low
cufflinks 4.72719 0.0 13.6916   High
cufflinks 2.44132 0.0 7.84523    
cufflinks 2.63391 0.0 8.31695    
cufflinks 2.559        
cufflinks 0.627        
cufflinks 1.271        
cufflinks 1.432        
cufflinks 1.009        
cufflinks 0.15       Low
cufflinks 2.714        
cufflinks 1.761        
cufflinks 1.744        
cufflinks 1.348        
cufflinks 2.914       High
cufflinks 0.773        
cufflinks 2.524        
cufflinks 2.981       High
cufflinks 0.456       Low
cufflinks 2.207        
cufflinks 0.797        

0 Strain