Gene : Glyma.08G108400 G. max Wm82.a2.v1
Defline:  (1 of 11) PTHR24015:SF884 - PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  1084
Name:  ? Glyma.08G108400 Secondary Identifier:  ? PAC:30537086
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G108400 0.5kb upstream 0.5kb upstream 4396 true Chr08: 8325811-8330206 Glycine max
Glyma.08G108400 0.5kb upstream 0.5kb upstream 500 false Chr08: 8325811-8326310 Glycine max
Glyma.08G108400 0.5kb downstream 0.5kb downstream 4396 true Chr08: 8326311-8330706 Glycine max
Glyma.08G108400 0.5kb downstream 0.5kb downstream 500 false Chr08: 8330207-8330706 Glycine max
Glyma.08G108400 1.0kb upstream 1.0kb upstream 4896 true Chr08: 8325311-8330206 Glycine max
Glyma.08G108400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 8325311-8326310 Glycine max
Glyma.08G108400 1.0kb downstream 1.0kb downstream 4896 true Chr08: 8326311-8331206 Glycine max
Glyma.08G108400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 8330207-8331206 Glycine max
Glyma.08G108400 2.0kb upstream 2.0kb upstream 5896 true Chr08: 8324311-8330206 Glycine max
Glyma.08G108400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 8324311-8326310 Glycine max
Glyma.08G108400 2.0kb downstream 2.0kb downstream 5896 true Chr08: 8326311-8332206 Glycine max
Glyma.08G108400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 8330207-8332206 Glycine max
Glyma.08G108400 5.0kb upstream 5.0kb upstream 8896 true Chr08: 8321311-8330206 Glycine max
Glyma.08G108400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 8321311-8326310 Glycine max
Glyma.08G108400 5.0kb downstream 5.0kb downstream 8896 true Chr08: 8326311-8335206 Glycine max
Glyma.08G108400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 8330207-8335206 Glycine max
Glyma.08G108400 10.0kb upstream 10.0kb upstream 13896 true Chr08: 8316311-8330206 Glycine max
Glyma.08G108400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 8316311-8326310 Glycine max
Glyma.08G108400 10.0kb downstream 10.0kb downstream 13896 true Chr08: 8326311-8340206 Glycine max
Glyma.08G108400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 8330207-8340206 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.789041 0.0 2.7576    
cufflinks 0.688978 0.0 2.43146    
cufflinks 0.615149 0.0 2.18396    
cufflinks 1.00965 0.0 3.43881    
cufflinks 0.295014 0.0 1.09888   Low
cufflinks 0.230777 0.0 0.868441 Low Low
cufflinks 1.11085 0.0 3.75617   High
cufflinks 0.643078 0.0 2.28293    
cufflinks 0.822675 0.0 2.85996    
cufflinks 0.284        
cufflinks 0.179        
cufflinks 1.234       High
cufflinks 0.214        
cufflinks 0.173        
cufflinks 0.126       Low
cufflinks 0.455        
cufflinks 0.247        
cufflinks 1.163       High
cufflinks 0.635        
cufflinks 0.552        
cufflinks 0.165       Low
cufflinks 0.694        
cufflinks 0.469        
cufflinks 0.275        
cufflinks 0.51        
cufflinks 0.148       Low

0 Strain