Gene : Glyma.08G048000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31065:SF15 - PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Genomic Order:  480
Name:  ? Glyma.08G048000 Secondary Identifier:  ? PAC:30539655
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G048000 0.5kb upstream 0.5kb upstream 2670 true Chr08: 3741469-3744138 Glycine max
Glyma.08G048000 0.5kb upstream 0.5kb upstream 500 false Chr08: 3741469-3741968 Glycine max
Glyma.08G048000 0.5kb downstream 0.5kb downstream 2670 true Chr08: 3741969-3744638 Glycine max
Glyma.08G048000 0.5kb downstream 0.5kb downstream 500 false Chr08: 3744139-3744638 Glycine max
Glyma.08G048000 1.0kb upstream 1.0kb upstream 3170 true Chr08: 3740969-3744138 Glycine max
Glyma.08G048000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3740969-3741968 Glycine max
Glyma.08G048000 1.0kb downstream 1.0kb downstream 3170 true Chr08: 3741969-3745138 Glycine max
Glyma.08G048000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3744139-3745138 Glycine max
Glyma.08G048000 2.0kb upstream 2.0kb upstream 4170 true Chr08: 3739969-3744138 Glycine max
Glyma.08G048000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3739969-3741968 Glycine max
Glyma.08G048000 2.0kb downstream 2.0kb downstream 4170 true Chr08: 3741969-3746138 Glycine max
Glyma.08G048000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3744139-3746138 Glycine max
Glyma.08G048000 5.0kb upstream 5.0kb upstream 7170 true Chr08: 3736969-3744138 Glycine max
Glyma.08G048000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3736969-3741968 Glycine max
Glyma.08G048000 5.0kb downstream 5.0kb downstream 7170 true Chr08: 3741969-3749138 Glycine max
Glyma.08G048000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3744139-3749138 Glycine max
Glyma.08G048000 10.0kb upstream 10.0kb upstream 12170 true Chr08: 3731969-3744138 Glycine max
Glyma.08G048000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3731969-3741968 Glycine max
Glyma.08G048000 10.0kb downstream 10.0kb downstream 12170 true Chr08: 3741969-3754138 Glycine max
Glyma.08G048000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3744139-3754138 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791790 5273 Angiosperm View MSA
122307174 5265 Fabidae View MSA
124061257 5270 Rosid View MSA
123743284 5271 Pentapetalae View MSA
122793533 5272 Eudicot View MSA
121063080 5274 Embryophyte View MSA
123102864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.01867 0.0 12.8837    
cufflinks 6.91171 0.0 20.4778    
cufflinks 1.75017 0.0 6.1498   Low
cufflinks 3.54821 0.0 11.5301    
cufflinks 7.03439 0.0 20.8073    
cufflinks 7.18733 0.0 21.1877    
cufflinks 2.19828 0.0 7.5963   Low
cufflinks 11.0345 0.0 30.8378   High
cufflinks 8.80798 0.0 25.2534    
cufflinks 2.307        
cufflinks 1.179       Low
cufflinks 1.662        
cufflinks 2.014        
cufflinks 2.26        
cufflinks 1.833        
cufflinks 2.306        
cufflinks 0.694       Low
cufflinks 1.33        
cufflinks 2.18        
cufflinks 2.057        
cufflinks 1.431        
cufflinks 2.55       High
cufflinks 2.575       High
cufflinks 2.146        
cufflinks 2.115        
cufflinks 1.609        

0 Strain