Gene : Glyma.08G058200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  582
Name:  ? Glyma.08G058200 Secondary Identifier:  ? PAC:30535970
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G058200 0.5kb upstream 0.5kb upstream 2346 true Chr08: 4465562-4467907 Glycine max
Glyma.08G058200 0.5kb upstream 0.5kb upstream 500 false Chr08: 4465562-4466061 Glycine max
Glyma.08G058200 0.5kb downstream 0.5kb downstream 2346 true Chr08: 4466062-4468407 Glycine max
Glyma.08G058200 0.5kb downstream 0.5kb downstream 500 false Chr08: 4467908-4468407 Glycine max
Glyma.08G058200 1.0kb upstream 1.0kb upstream 2846 true Chr08: 4465062-4467907 Glycine max
Glyma.08G058200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4465062-4466061 Glycine max
Glyma.08G058200 1.0kb downstream 1.0kb downstream 2846 true Chr08: 4466062-4468907 Glycine max
Glyma.08G058200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4467908-4468907 Glycine max
Glyma.08G058200 2.0kb upstream 2.0kb upstream 3846 true Chr08: 4464062-4467907 Glycine max
Glyma.08G058200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4464062-4466061 Glycine max
Glyma.08G058200 2.0kb downstream 2.0kb downstream 3846 true Chr08: 4466062-4469907 Glycine max
Glyma.08G058200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4467908-4469907 Glycine max
Glyma.08G058200 5.0kb upstream 5.0kb upstream 6846 true Chr08: 4461062-4467907 Glycine max
Glyma.08G058200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4461062-4466061 Glycine max
Glyma.08G058200 5.0kb downstream 5.0kb downstream 6846 true Chr08: 4466062-4472907 Glycine max
Glyma.08G058200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4467908-4472907 Glycine max
Glyma.08G058200 10.0kb upstream 10.0kb upstream 11846 true Chr08: 4456062-4467907 Glycine max
Glyma.08G058200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4456062-4466061 Glycine max
Glyma.08G058200 10.0kb downstream 10.0kb downstream 11846 true Chr08: 4466062-4477907 Glycine max
Glyma.08G058200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4467908-4477907 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299464 5265 Fabidae View MSA
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.2887 0.0 34.0862    
cufflinks 11.9802 0.0 33.3086    
cufflinks 32.751 0.0 87.4192 High High
cufflinks 13.806 0.0 37.9223    
cufflinks 14.5077 0.0 39.6767    
cufflinks 40.4822 0.0 108.616 High High
cufflinks 12.4668 0.0 34.5489    
cufflinks 16.0998 0.0 43.7449    
cufflinks 12.719 0.0 35.1268    
cufflinks 10.853     High  
cufflinks 27.221     High High
cufflinks 13.756     High  
cufflinks 9.017     High  
cufflinks 8.346     High  
cufflinks 15.239     High  
cufflinks 5.777       Low
cufflinks 15.134     High  
cufflinks 8.698     High  
cufflinks 7.19        
cufflinks 5.97       Low
cufflinks 22.359     High High
cufflinks 5.507       Low
cufflinks 5.008       Low
cufflinks 25.062     High High
cufflinks 6.344        
cufflinks 16.94     High  

0 Strain