Gene : Glyma.08G030400 G. max Wm82.a2.v1
Defline:  (1 of 11) 2.1.1.104 - Caffeoyl-CoA O-methyltransferase / Trans-caffeoyl-CoA 3-O-methyltransferase Genomic Order:  304
Name:  ? Glyma.08G030400 Secondary Identifier:  ? PAC:30538440
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1121 Glycine max pathologic  
Gmax PWY-361 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G030400 0.5kb upstream 0.5kb upstream 2148 true Chr08: 2428812-2430959 Glycine max
Glyma.08G030400 0.5kb upstream 0.5kb upstream 500 false Chr08: 2428812-2429311 Glycine max
Glyma.08G030400 0.5kb downstream 0.5kb downstream 2148 true Chr08: 2429312-2431459 Glycine max
Glyma.08G030400 0.5kb downstream 0.5kb downstream 500 false Chr08: 2430960-2431459 Glycine max
Glyma.08G030400 1.0kb upstream 1.0kb upstream 2648 true Chr08: 2428312-2430959 Glycine max
Glyma.08G030400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2428312-2429311 Glycine max
Glyma.08G030400 1.0kb downstream 1.0kb downstream 2648 true Chr08: 2429312-2431959 Glycine max
Glyma.08G030400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2430960-2431959 Glycine max
Glyma.08G030400 2.0kb upstream 2.0kb upstream 3648 true Chr08: 2427312-2430959 Glycine max
Glyma.08G030400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2427312-2429311 Glycine max
Glyma.08G030400 2.0kb downstream 2.0kb downstream 3648 true Chr08: 2429312-2432959 Glycine max
Glyma.08G030400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2430960-2432959 Glycine max
Glyma.08G030400 5.0kb upstream 5.0kb upstream 6648 true Chr08: 2424312-2430959 Glycine max
Glyma.08G030400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2424312-2429311 Glycine max
Glyma.08G030400 5.0kb downstream 5.0kb downstream 6648 true Chr08: 2429312-2435959 Glycine max
Glyma.08G030400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2430960-2435959 Glycine max
Glyma.08G030400 10.0kb upstream 10.0kb upstream 11648 true Chr08: 2419312-2430959 Glycine max
Glyma.08G030400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2419312-2429311 Glycine max
Glyma.08G030400 10.0kb downstream 10.0kb downstream 11648 true Chr08: 2429312-2440959 Glycine max
Glyma.08G030400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2430960-2440959 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314949 5265 Fabidae View MSA
124070229 5270 Rosid View MSA
123751667 5271 Pentapetalae View MSA
122774127 5272 Eudicot View MSA
122050348 5273 Angiosperm View MSA
121311864 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0630027 0.0 0.263736 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.173559 0.0 0.691627 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0228357 0.0 0.104592 Low  
cufflinks 0.0255658 0.0 0.11571 Low  
cufflinks 1.10149 0.0 4.05909   High
cufflinks 0.009     Low Low
cufflinks 0.154       High
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.155       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.513       High
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.062     Low  
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.054     Low  

0 Strain