Gene : Glyma.08G027600 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00289//PF02785//PF13535 - Carbamoyl-phosphate synthase L chain, N-terminal domain (CPSase_L_chain) // Biotin carboxylase C-terminal domain (Biotin_carb_C) // ATP-grasp domain (ATP-grasp_4) Genomic Order:  276
Name:  ? Glyma.08G027600 Secondary Identifier:  ? PAC:30539688
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-1264 Glycine max pathologic  
Gmax PWY-4381 Glycine max pathologic  
Gmax PWY-5156 Glycine max pathologic  
Gmax PWY-7388 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G027600 0.5kb upstream 0.5kb upstream 8184 true Chr08: 2200021-2208204 Glycine max
Glyma.08G027600 0.5kb upstream 0.5kb upstream 500 false Chr08: 2207705-2208204 Glycine max
Glyma.08G027600 0.5kb downstream 0.5kb downstream 8184 true Chr08: 2199521-2207704 Glycine max
Glyma.08G027600 0.5kb downstream 0.5kb downstream 500 false Chr08: 2199521-2200020 Glycine max
Glyma.08G027600 1.0kb upstream 1.0kb upstream 8684 true Chr08: 2200021-2208704 Glycine max
Glyma.08G027600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2207705-2208704 Glycine max
Glyma.08G027600 1.0kb downstream 1.0kb downstream 8684 true Chr08: 2199021-2207704 Glycine max
Glyma.08G027600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2199021-2200020 Glycine max
Glyma.08G027600 2.0kb upstream 2.0kb upstream 9684 true Chr08: 2200021-2209704 Glycine max
Glyma.08G027600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2207705-2209704 Glycine max
Glyma.08G027600 2.0kb downstream 2.0kb downstream 9684 true Chr08: 2198021-2207704 Glycine max
Glyma.08G027600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2198021-2200020 Glycine max
Glyma.08G027600 5.0kb upstream 5.0kb upstream 12684 true Chr08: 2200021-2212704 Glycine max
Glyma.08G027600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2207705-2212704 Glycine max
Glyma.08G027600 5.0kb downstream 5.0kb downstream 12684 true Chr08: 2195021-2207704 Glycine max
Glyma.08G027600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2195021-2200020 Glycine max
Glyma.08G027600 10.0kb upstream 10.0kb upstream 17684 true Chr08: 2200021-2217704 Glycine max
Glyma.08G027600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2207705-2217704 Glycine max
Glyma.08G027600 10.0kb downstream 10.0kb downstream 17684 true Chr08: 2190021-2207704 Glycine max
Glyma.08G027600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2190021-2200020 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303973 5265 Fabidae View MSA
124069238 5270 Rosid View MSA
123745684 5271 Pentapetalae View MSA
122794668 5272 Eudicot View MSA
122048347 5273 Angiosperm View MSA
121348356 5274 Embryophyte View MSA
123425779 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.3789 0.0 59.3765    
cufflinks 26.0844 0.0 92.8397 High  
cufflinks 11.2708 0.0 38.5632   Low
cufflinks 24.565 0.0 86.7731 High  
cufflinks 42.5679 0.0 168.953 High High
cufflinks 27.117 0.0 97.385 High  
cufflinks 42.9676 0.0 170.652 High High
cufflinks 19.8015 0.0 68.2616    
cufflinks 29.7867 0.0 108.85 High  
cufflinks 4.341        
cufflinks 0.471       Low
cufflinks 2.447        
cufflinks 7.341     High High
cufflinks 10.262     High High
cufflinks 0.599       Low
cufflinks 4.531        
cufflinks 1.799        
cufflinks 5.06        
cufflinks 4.773        
cufflinks 3.578        
cufflinks 1.031       Low
cufflinks 3.719        
cufflinks 5.095        
cufflinks 0.842       Low
cufflinks 3.944        
cufflinks 1.579        

0 Strain