Gene : Glyma.07G112700 G. max Wm82.a2.v1

Defline:  (1 of 4) PTHR24096:SF169 - 4-COUMARATE--COA LIGASE 3 Genomic Order:  1127
Name:  ? Glyma.07G112700 Secondary Identifier:  ? PAC:30494949

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1121 Glycine max pathologic  
Gmax PWY1F-FLAVSYN Glycine max pathologic  
Gmax PWY-361 Glycine max pathologic  
Gmax PWY-6435 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G112700 0.5kb upstream 0.5kb upstream 940 true Chr07: 11693308-11694247 Glycine max
Glyma.07G112700 0.5kb upstream 0.5kb upstream 500 false Chr07: 11693748-11694247 Glycine max
Glyma.07G112700 0.5kb downstream 0.5kb downstream 940 true Chr07: 11692808-11693747 Glycine max
Glyma.07G112700 0.5kb downstream 0.5kb downstream 500 false Chr07: 11692808-11693307 Glycine max
Glyma.07G112700 1.0kb upstream 1.0kb upstream 1440 true Chr07: 11693308-11694747 Glycine max
Glyma.07G112700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 11693748-11694747 Glycine max
Glyma.07G112700 1.0kb downstream 1.0kb downstream 1440 true Chr07: 11692308-11693747 Glycine max
Glyma.07G112700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 11692308-11693307 Glycine max
Glyma.07G112700 2.0kb upstream 2.0kb upstream 2440 true Chr07: 11693308-11695747 Glycine max
Glyma.07G112700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 11693748-11695747 Glycine max
Glyma.07G112700 2.0kb downstream 2.0kb downstream 2440 true Chr07: 11691308-11693747 Glycine max
Glyma.07G112700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 11691308-11693307 Glycine max
Glyma.07G112700 5.0kb upstream 5.0kb upstream 5440 true Chr07: 11693308-11698747 Glycine max
Glyma.07G112700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 11693748-11698747 Glycine max
Glyma.07G112700 5.0kb downstream 5.0kb downstream 5440 true Chr07: 11688308-11693747 Glycine max
Glyma.07G112700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 11688308-11693307 Glycine max
Glyma.07G112700 10.0kb upstream 10.0kb upstream 10440 true Chr07: 11693308-11703747 Glycine max
Glyma.07G112700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 11693748-11703747 Glycine max
Glyma.07G112700 10.0kb downstream 10.0kb downstream 10440 true Chr07: 11683308-11693747 Glycine max
Glyma.07G112700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 11683308-11693307 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121615148 5273 Angiosperm Singleton cluster - no MSA
122249857 5265 Fabidae Singleton cluster - no MSA
123993221 5270 Rosid Singleton cluster - no MSA
123568022 5271 Pentapetalae Singleton cluster - no MSA
122602769 5272 Eudicot Singleton cluster - no MSA
120887345 5274 Embryophyte Singleton cluster - no MSA
122928103 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain