Gene : Glyma.07G055900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12601:SF17 - TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  559
Name:  ? Glyma.07G055900 Secondary Identifier:  ? PAC:30494837
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G055900 0.5kb upstream 0.5kb upstream 16882 true Chr07: 4918984-4935865 Glycine max
Glyma.07G055900 0.5kb upstream 0.5kb upstream 500 false Chr07: 4935366-4935865 Glycine max
Glyma.07G055900 0.5kb downstream 0.5kb downstream 16882 true Chr07: 4918484-4935365 Glycine max
Glyma.07G055900 0.5kb downstream 0.5kb downstream 500 false Chr07: 4918484-4918983 Glycine max
Glyma.07G055900 1.0kb upstream 1.0kb upstream 17382 true Chr07: 4918984-4936365 Glycine max
Glyma.07G055900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4935366-4936365 Glycine max
Glyma.07G055900 1.0kb downstream 1.0kb downstream 17382 true Chr07: 4917984-4935365 Glycine max
Glyma.07G055900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4917984-4918983 Glycine max
Glyma.07G055900 2.0kb upstream 2.0kb upstream 18382 true Chr07: 4918984-4937365 Glycine max
Glyma.07G055900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4935366-4937365 Glycine max
Glyma.07G055900 2.0kb downstream 2.0kb downstream 18382 true Chr07: 4916984-4935365 Glycine max
Glyma.07G055900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4916984-4918983 Glycine max
Glyma.07G055900 5.0kb upstream 5.0kb upstream 21382 true Chr07: 4918984-4940365 Glycine max
Glyma.07G055900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4935366-4940365 Glycine max
Glyma.07G055900 5.0kb downstream 5.0kb downstream 21382 true Chr07: 4913984-4935365 Glycine max
Glyma.07G055900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4913984-4918983 Glycine max
Glyma.07G055900 10.0kb upstream 10.0kb upstream 26382 true Chr07: 4918984-4945365 Glycine max
Glyma.07G055900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4935366-4945365 Glycine max
Glyma.07G055900 10.0kb downstream 10.0kb downstream 26382 true Chr07: 4908984-4935365 Glycine max
Glyma.07G055900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4908984-4918983 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305072 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.0694 0.0 225.9 High High
cufflinks 14.8365 0.0 59.8916    
cufflinks 11.9437 0.0 45.8042    
cufflinks 2.27152 0.0 8.25928    
cufflinks 3.33547 0.0 11.5061    
cufflinks 1.80449 0.0 6.8005    
cufflinks 1.55007 0.0 6.87647   Low
cufflinks 5.83762 0.0 22.3074    
cufflinks 2.76355 0.0 9.7009    
cufflinks 0.57        
cufflinks 0.107       Low
cufflinks 1.745        
cufflinks 0.071     Low Low
cufflinks 0.066     Low Low
cufflinks 0.207        
cufflinks 3.361        
cufflinks 0.736        
cufflinks 2.997        
cufflinks 2.761        
cufflinks 5.244       High
cufflinks 0.106       Low
cufflinks 4.893       High
cufflinks 4.981       High
cufflinks 0.186        
cufflinks 3.867        
cufflinks 0.43        

0 Strain