Gene : Glyma.06G039200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  392
Name:  ? Glyma.06G039200 Secondary Identifier:  ? PAC:30551741
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G039200 0.5kb upstream 0.5kb upstream 9507 true Chr06: 2967381-2976887 Glycine max
Glyma.06G039200 0.5kb upstream 0.5kb upstream 500 false Chr06: 2967381-2967880 Glycine max
Glyma.06G039200 0.5kb downstream 0.5kb downstream 9507 true Chr06: 2967881-2977387 Glycine max
Glyma.06G039200 0.5kb downstream 0.5kb downstream 500 false Chr06: 2976888-2977387 Glycine max
Glyma.06G039200 1.0kb upstream 1.0kb upstream 10007 true Chr06: 2966881-2976887 Glycine max
Glyma.06G039200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 2966881-2967880 Glycine max
Glyma.06G039200 1.0kb downstream 1.0kb downstream 10007 true Chr06: 2967881-2977887 Glycine max
Glyma.06G039200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 2976888-2977887 Glycine max
Glyma.06G039200 2.0kb upstream 2.0kb upstream 11007 true Chr06: 2965881-2976887 Glycine max
Glyma.06G039200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 2965881-2967880 Glycine max
Glyma.06G039200 2.0kb downstream 2.0kb downstream 11007 true Chr06: 2967881-2978887 Glycine max
Glyma.06G039200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 2976888-2978887 Glycine max
Glyma.06G039200 5.0kb upstream 5.0kb upstream 14007 true Chr06: 2962881-2976887 Glycine max
Glyma.06G039200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 2962881-2967880 Glycine max
Glyma.06G039200 5.0kb downstream 5.0kb downstream 14007 true Chr06: 2967881-2981887 Glycine max
Glyma.06G039200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 2976888-2981887 Glycine max
Glyma.06G039200 10.0kb upstream 10.0kb upstream 19007 true Chr06: 2957881-2976887 Glycine max
Glyma.06G039200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 2957881-2967880 Glycine max
Glyma.06G039200 10.0kb downstream 10.0kb downstream 19007 true Chr06: 2967881-2986887 Glycine max
Glyma.06G039200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 2976888-2986887 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304460 5265 Fabidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.26572 0.0 35.4829   High
cufflinks 1.75095 0.0 6.88992   Low
cufflinks 10.7139 0.0 36.9044   High
cufflinks 5.01421 0.0 17.8172    
cufflinks 3.70715 0.0 13.7838    
cufflinks 5.34007 0.0 18.888    
cufflinks 4.65253 0.0 16.6329    
cufflinks 4.71936 0.0 16.7764    
cufflinks 4.17435 0.0 15.3315    
cufflinks 0.393        
cufflinks 1.028       High
cufflinks 0.98       High
cufflinks 0.63        
cufflinks 0.426        
cufflinks 0.528        
cufflinks 0.27       Low
cufflinks 0.764        
cufflinks 0.723        
cufflinks 0.294        
cufflinks 0.321        
cufflinks 0.907        
cufflinks 0.337        
cufflinks 0.169       Low
cufflinks 1.359       High
cufflinks 0.252       Low
cufflinks 1.025       High

0 Strain