Gene : Glyma.05G197100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR18959 - CALPONIN/TRANSGELIN Genomic Order:  1971
Name:  ? Glyma.05G197100 Secondary Identifier:  ? PAC:30527663
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G197100 0.5kb upstream 0.5kb upstream 9816 true Chr05: 38128289-38138104 Glycine max
Glyma.05G197100 0.5kb upstream 0.5kb upstream 500 false Chr05: 38137605-38138104 Glycine max
Glyma.05G197100 0.5kb downstream 0.5kb downstream 9816 true Chr05: 38127789-38137604 Glycine max
Glyma.05G197100 0.5kb downstream 0.5kb downstream 500 false Chr05: 38127789-38128288 Glycine max
Glyma.05G197100 1.0kb upstream 1.0kb upstream 10316 true Chr05: 38128289-38138604 Glycine max
Glyma.05G197100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38137605-38138604 Glycine max
Glyma.05G197100 1.0kb downstream 1.0kb downstream 10316 true Chr05: 38127289-38137604 Glycine max
Glyma.05G197100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38127289-38128288 Glycine max
Glyma.05G197100 2.0kb upstream 2.0kb upstream 11316 true Chr05: 38128289-38139604 Glycine max
Glyma.05G197100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38137605-38139604 Glycine max
Glyma.05G197100 2.0kb downstream 2.0kb downstream 11316 true Chr05: 38126289-38137604 Glycine max
Glyma.05G197100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38126289-38128288 Glycine max
Glyma.05G197100 5.0kb upstream 5.0kb upstream 14316 true Chr05: 38128289-38142604 Glycine max
Glyma.05G197100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38137605-38142604 Glycine max
Glyma.05G197100 5.0kb downstream 5.0kb downstream 14316 true Chr05: 38123289-38137604 Glycine max
Glyma.05G197100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38123289-38128288 Glycine max
Glyma.05G197100 10.0kb upstream 10.0kb upstream 19316 true Chr05: 38128289-38147604 Glycine max
Glyma.05G197100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38137605-38147604 Glycine max
Glyma.05G197100 10.0kb downstream 10.0kb downstream 19316 true Chr05: 38118289-38137604 Glycine max
Glyma.05G197100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38118289-38128288 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296515 5265 Fabidae View MSA
124072948 5270 Rosid View MSA
123746309 5271 Pentapetalae View MSA
122795407 5272 Eudicot View MSA
122050020 5273 Angiosperm View MSA
121348851 5274 Embryophyte View MSA
123381040 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.54988 0.0 42.1349   High
cufflinks 0.607314 0.0 5.4677   Low
cufflinks 1.53444 0.0 17.3789    
cufflinks 1.46356 0.0 10.1317    
cufflinks 4.05793 0.0 18.435    
cufflinks 2.29182 0.0 18.0374    
cufflinks 0.291836 0.0 3.19688   Low
cufflinks 2.73411 0.0 16.141    
cufflinks 1.87757 0.0 11.7055    
cufflinks 0.062     Low  
cufflinks 0.118        
cufflinks 0.105     Low  
cufflinks 0.481       High
cufflinks 0.334       High
cufflinks 0.095        
cufflinks 0.087     Low  
cufflinks 0.083        
cufflinks 0.219       High
cufflinks 0.052     Low Low
cufflinks 0.058     Low Low
cufflinks 0.13        
cufflinks 0.098        
cufflinks 0.055     Low Low
cufflinks 0.09        
cufflinks 0.094     Low  
cufflinks 0.186        

0 Strain