Gene : Glyma.05G170300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10366//PTHR10366:SF326 - NAD DEPENDENT EPIMERASE/DEHYDRATASE Genomic Order:  1703
Name:  ? Glyma.05G170300 Secondary Identifier:  ? PAC:30526958
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-63 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G170300 0.5kb upstream 0.5kb upstream 6790 true Chr05: 36056767-36063556 Glycine max
Glyma.05G170300 0.5kb upstream 0.5kb upstream 500 false Chr05: 36056767-36057266 Glycine max
Glyma.05G170300 0.5kb downstream 0.5kb downstream 6790 true Chr05: 36057267-36064056 Glycine max
Glyma.05G170300 0.5kb downstream 0.5kb downstream 500 false Chr05: 36063557-36064056 Glycine max
Glyma.05G170300 1.0kb upstream 1.0kb upstream 7290 true Chr05: 36056267-36063556 Glycine max
Glyma.05G170300 1.0kb upstream 1.0kb upstream 1000 false Chr05: 36056267-36057266 Glycine max
Glyma.05G170300 1.0kb downstream 1.0kb downstream 7290 true Chr05: 36057267-36064556 Glycine max
Glyma.05G170300 1.0kb downstream 1.0kb downstream 1000 false Chr05: 36063557-36064556 Glycine max
Glyma.05G170300 2.0kb upstream 2.0kb upstream 8290 true Chr05: 36055267-36063556 Glycine max
Glyma.05G170300 2.0kb upstream 2.0kb upstream 2000 false Chr05: 36055267-36057266 Glycine max
Glyma.05G170300 2.0kb downstream 2.0kb downstream 8290 true Chr05: 36057267-36065556 Glycine max
Glyma.05G170300 2.0kb downstream 2.0kb downstream 2000 false Chr05: 36063557-36065556 Glycine max
Glyma.05G170300 5.0kb upstream 5.0kb upstream 11290 true Chr05: 36052267-36063556 Glycine max
Glyma.05G170300 5.0kb upstream 5.0kb upstream 5000 false Chr05: 36052267-36057266 Glycine max
Glyma.05G170300 5.0kb downstream 5.0kb downstream 11290 true Chr05: 36057267-36068556 Glycine max
Glyma.05G170300 5.0kb downstream 5.0kb downstream 5000 false Chr05: 36063557-36068556 Glycine max
Glyma.05G170300 10.0kb upstream 10.0kb upstream 16290 true Chr05: 36047267-36063556 Glycine max
Glyma.05G170300 10.0kb upstream 10.0kb upstream 10000 false Chr05: 36047267-36057266 Glycine max
Glyma.05G170300 10.0kb downstream 10.0kb downstream 16290 true Chr05: 36057267-36073556 Glycine max
Glyma.05G170300 10.0kb downstream 10.0kb downstream 10000 false Chr05: 36063557-36073556 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314330 5265 Fabidae View MSA
124063574 5270 Rosid View MSA
123743067 5271 Pentapetalae View MSA
122788124 5272 Eudicot View MSA
122043632 5273 Angiosperm View MSA
121349554 5274 Embryophyte View MSA
123428633 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.557005 0.0 3.36666   Low
cufflinks 5.37706 0.0 22.0384    
cufflinks 1.39644 0.0 8.66864    
cufflinks 5.14292 0.0 21.796    
cufflinks 2.87046 0.0 15.924    
cufflinks 12.0774 0.0 39.3152   High
cufflinks 3.51358 0.0 16.2748    
cufflinks 3.65084 0.0 13.9224    
cufflinks 2.78923 0.0 11.6031    
cufflinks 0.461       High
cufflinks 0.09        
cufflinks 0.264        
cufflinks 0.231        
cufflinks 0.223        
cufflinks 0.066       Low
cufflinks 0.102        
cufflinks 0.88       High
cufflinks 0.277        
cufflinks 0.4       High
cufflinks 0.064     Low Low
cufflinks 0.159        
cufflinks 0.088     Low  
cufflinks 0.214        
cufflinks 0.052     Low Low
cufflinks 0.075     Low Low
cufflinks 0.379        

0 Strain