Gene : Glyma.05G151600 G. max Wm82.a2.v1
Defline:  (1 of 11) PTHR24015:SF884 - PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  1516
Name:  ? Glyma.05G151600 Secondary Identifier:  ? PAC:30527337
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G151600 0.5kb upstream 0.5kb upstream 5478 true Chr05: 34518361-34523838 Glycine max
Glyma.05G151600 0.5kb upstream 0.5kb upstream 500 false Chr05: 34518361-34518860 Glycine max
Glyma.05G151600 0.5kb downstream 0.5kb downstream 5478 true Chr05: 34518861-34524338 Glycine max
Glyma.05G151600 0.5kb downstream 0.5kb downstream 500 false Chr05: 34523839-34524338 Glycine max
Glyma.05G151600 1.0kb upstream 1.0kb upstream 5978 true Chr05: 34517861-34523838 Glycine max
Glyma.05G151600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 34517861-34518860 Glycine max
Glyma.05G151600 1.0kb downstream 1.0kb downstream 5978 true Chr05: 34518861-34524838 Glycine max
Glyma.05G151600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 34523839-34524838 Glycine max
Glyma.05G151600 2.0kb upstream 2.0kb upstream 6978 true Chr05: 34516861-34523838 Glycine max
Glyma.05G151600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 34516861-34518860 Glycine max
Glyma.05G151600 2.0kb downstream 2.0kb downstream 6978 true Chr05: 34518861-34525838 Glycine max
Glyma.05G151600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 34523839-34525838 Glycine max
Glyma.05G151600 5.0kb upstream 5.0kb upstream 9978 true Chr05: 34513861-34523838 Glycine max
Glyma.05G151600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 34513861-34518860 Glycine max
Glyma.05G151600 5.0kb downstream 5.0kb downstream 9978 true Chr05: 34518861-34528838 Glycine max
Glyma.05G151600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 34523839-34528838 Glycine max
Glyma.05G151600 10.0kb upstream 10.0kb upstream 14978 true Chr05: 34508861-34523838 Glycine max
Glyma.05G151600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 34508861-34518860 Glycine max
Glyma.05G151600 10.0kb downstream 10.0kb downstream 14978 true Chr05: 34518861-34533838 Glycine max
Glyma.05G151600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 34523839-34533838 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.289082 0.0 1.07795    
cufflinks 0.284147 0.0 1.05957    
cufflinks 0.102233 0.0 0.398204 Low Low
cufflinks 0.272224 0.0 1.01706    
cufflinks 0.189599 0.0 0.720978 Low  
cufflinks 0.0779752 0.0 0.307229 Low Low
cufflinks 0.194431 0.0 0.738341 Low  
cufflinks 0.15867 0.0 0.607514 Low  
cufflinks 0.225776 0.0 0.850963 Low  
cufflinks 0.103        
cufflinks 0.015     Low Low
cufflinks 0.151        
cufflinks 0.084     Low  
cufflinks 0.094        
cufflinks 0.054        
cufflinks 0.109        
cufflinks 0.027     Low Low
cufflinks 0.203       High
cufflinks 0.174        
cufflinks 0.164        
cufflinks 0.013     Low Low
cufflinks 0.132        
cufflinks 0.176        
cufflinks 0.051     Low  
cufflinks 0.204       High
cufflinks 0.022     Low Low

0 Strain