Gene : Glyma.05G039900 G. max Wm82.a2.v1
Defline:  (1 of 85) PF00069//PF08263//PF13855 - Protein kinase domain (Pkinase) // Leucine rich repeat N-terminal domain (LRRNT_2) // Leucine rich repeat (LRR_8) Genomic Order:  399
Name:  ? Glyma.05G039900 Secondary Identifier:  ? PAC:30524784
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G039900 0.5kb upstream 0.5kb upstream 4611 true Chr05: 3540909-3545519 Glycine max
Glyma.05G039900 0.5kb upstream 0.5kb upstream 500 false Chr05: 3545020-3545519 Glycine max
Glyma.05G039900 0.5kb downstream 0.5kb downstream 4611 true Chr05: 3540409-3545019 Glycine max
Glyma.05G039900 0.5kb downstream 0.5kb downstream 500 false Chr05: 3540409-3540908 Glycine max
Glyma.05G039900 1.0kb upstream 1.0kb upstream 5111 true Chr05: 3540909-3546019 Glycine max
Glyma.05G039900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3545020-3546019 Glycine max
Glyma.05G039900 1.0kb downstream 1.0kb downstream 5111 true Chr05: 3539909-3545019 Glycine max
Glyma.05G039900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3539909-3540908 Glycine max
Glyma.05G039900 2.0kb upstream 2.0kb upstream 6111 true Chr05: 3540909-3547019 Glycine max
Glyma.05G039900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3545020-3547019 Glycine max
Glyma.05G039900 2.0kb downstream 2.0kb downstream 6111 true Chr05: 3538909-3545019 Glycine max
Glyma.05G039900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3538909-3540908 Glycine max
Glyma.05G039900 5.0kb upstream 5.0kb upstream 9111 true Chr05: 3540909-3550019 Glycine max
Glyma.05G039900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3545020-3550019 Glycine max
Glyma.05G039900 5.0kb downstream 5.0kb downstream 9111 true Chr05: 3535909-3545019 Glycine max
Glyma.05G039900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3535909-3540908 Glycine max
Glyma.05G039900 10.0kb upstream 10.0kb upstream 14111 true Chr05: 3540909-3555019 Glycine max
Glyma.05G039900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3545020-3555019 Glycine max
Glyma.05G039900 10.0kb downstream 10.0kb downstream 14111 true Chr05: 3530909-3545019 Glycine max
Glyma.05G039900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3530909-3540908 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121607911 5273 Angiosperm Singleton cluster - no MSA
122239453 5265 Fabidae Singleton cluster - no MSA
123984688 5270 Rosid Singleton cluster - no MSA
123560184 5271 Pentapetalae Singleton cluster - no MSA
122594985 5272 Eudicot Singleton cluster - no MSA
120880188 5274 Embryophyte Singleton cluster - no MSA
122921057 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.27982 0.0 6.59721   Low
cufflinks 5.48762 0.0 14.7797    
cufflinks 3.32768 0.0 9.29363    
cufflinks 3.98578 0.0 10.9278    
cufflinks 7.22746 0.0 19.2884   High
cufflinks 1.74318 0.0 5.22048   Low
cufflinks 3.99839 0.0 10.9349    
cufflinks 4.7797 0.0 12.9379    
cufflinks 3.45002 0.0 9.5521    
cufflinks 6.078        
cufflinks 0.151        
cufflinks 4.261        
cufflinks 7.482     High  
cufflinks 12.329     High High
cufflinks 0.009     Low Low
cufflinks 3.026        
cufflinks 0.374        
cufflinks 11.656     High High
cufflinks 2.465        
cufflinks 2.48        
cufflinks 0.073       Low
cufflinks 3.182        
cufflinks 2.553        
cufflinks 0.114       Low
cufflinks 2.533        
cufflinks 0.267        

0 Strain