Gene : Cagra.18459s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11089:SF43 - NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  3
Name:  ? Cagra.18459s0003 Secondary Identifier:  ? PAC:28913461
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6845 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.18459s0003 0.5kb upstream 0.5kb upstream 3750 true Scaffold18459: 8214-11963 Capsella grandiflora
Cagra.18459s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold18459: 11464-11963 Capsella grandiflora
Cagra.18459s0003 0.5kb downstream 0.5kb downstream 3750 true Scaffold18459: 7714-11463 Capsella grandiflora
Cagra.18459s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold18459: 7714-8213 Capsella grandiflora
Cagra.18459s0003 1.0kb upstream 1.0kb upstream 4250 true Scaffold18459: 8214-12463 Capsella grandiflora
Cagra.18459s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold18459: 11464-12463 Capsella grandiflora
Cagra.18459s0003 1.0kb downstream 1.0kb downstream 4250 true Scaffold18459: 7214-11463 Capsella grandiflora
Cagra.18459s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold18459: 7214-8213 Capsella grandiflora
Cagra.18459s0003 2.0kb upstream 2.0kb upstream 5250 true Scaffold18459: 8214-13463 Capsella grandiflora
Cagra.18459s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold18459: 11464-13463 Capsella grandiflora
Cagra.18459s0003 2.0kb downstream 2.0kb downstream 5250 true Scaffold18459: 6214-11463 Capsella grandiflora
Cagra.18459s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold18459: 6214-8213 Capsella grandiflora
Cagra.18459s0003 5.0kb upstream 5.0kb upstream 8250 true Scaffold18459: 8214-16463 Capsella grandiflora
Cagra.18459s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold18459: 11464-16463 Capsella grandiflora
Cagra.18459s0003 5.0kb downstream 5.0kb downstream 8250 true Scaffold18459: 3214-11463 Capsella grandiflora
Cagra.18459s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold18459: 3214-8213 Capsella grandiflora
Cagra.18459s0003 10.0kb upstream 10.0kb upstream 13250 true Scaffold18459: 8214-21463 Capsella grandiflora
Cagra.18459s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold18459: 11464-21463 Capsella grandiflora
Cagra.18459s0003 10.0kb downstream 10.0kb downstream 11463 true Scaffold18459: 1-11463 Capsella grandiflora
Cagra.18459s0003 10.0kb downstream 10.0kb downstream 8213 false Scaffold18459: 1-8213 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374132 5261 Brassicaceae View MSA
123833305 5264 Brassicales-Malvales View MSA
124342471 5266 SBM View MSA
124243451 5268 Malvidae View MSA
124065366 5270 Rosid View MSA
123739170 5271 Pentapetalae View MSA
122792557 5272 Eudicot View MSA
122045244 5273 Angiosperm View MSA
121346425 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain