Gene : Cagra.7229s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL Genomic Order:  2
Name:  ? Cagra.7229s0002 Secondary Identifier:  ? PAC:28894364
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7229s0002 0.5kb upstream 0.5kb upstream 2556 true Scaffold7229: 3959-6514 Capsella grandiflora
Cagra.7229s0002 0.5kb upstream 0.5kb upstream 370 false Scaffold7229: 6145-6514 Capsella grandiflora
Cagra.7229s0002 0.5kb downstream 0.5kb downstream 2686 true Scaffold7229: 3459-6144 Capsella grandiflora
Cagra.7229s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold7229: 3459-3958 Capsella grandiflora
Cagra.7229s0002 1.0kb upstream 1.0kb upstream 2556 true Scaffold7229: 3959-6514 Capsella grandiflora
Cagra.7229s0002 1.0kb upstream 1.0kb upstream 370 false Scaffold7229: 6145-6514 Capsella grandiflora
Cagra.7229s0002 1.0kb downstream 1.0kb downstream 3186 true Scaffold7229: 2959-6144 Capsella grandiflora
Cagra.7229s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold7229: 2959-3958 Capsella grandiflora
Cagra.7229s0002 2.0kb upstream 2.0kb upstream 2556 true Scaffold7229: 3959-6514 Capsella grandiflora
Cagra.7229s0002 2.0kb upstream 2.0kb upstream 370 false Scaffold7229: 6145-6514 Capsella grandiflora
Cagra.7229s0002 2.0kb downstream 2.0kb downstream 4186 true Scaffold7229: 1959-6144 Capsella grandiflora
Cagra.7229s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold7229: 1959-3958 Capsella grandiflora
Cagra.7229s0002 5.0kb upstream 5.0kb upstream 2556 true Scaffold7229: 3959-6514 Capsella grandiflora
Cagra.7229s0002 5.0kb upstream 5.0kb upstream 370 false Scaffold7229: 6145-6514 Capsella grandiflora
Cagra.7229s0002 5.0kb downstream 5.0kb downstream 6144 true Scaffold7229: 1-6144 Capsella grandiflora
Cagra.7229s0002 5.0kb downstream 5.0kb downstream 3958 false Scaffold7229: 1-3958 Capsella grandiflora
Cagra.7229s0002 10.0kb upstream 10.0kb upstream 2556 true Scaffold7229: 3959-6514 Capsella grandiflora
Cagra.7229s0002 10.0kb upstream 10.0kb upstream 370 false Scaffold7229: 6145-6514 Capsella grandiflora
Cagra.7229s0002 10.0kb downstream 10.0kb downstream 6144 true Scaffold7229: 1-6144 Capsella grandiflora
Cagra.7229s0002 10.0kb downstream 10.0kb downstream 3958 false Scaffold7229: 1-3958 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368946 5261 Brassicaceae View MSA
123839952 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain