Gene : Cagra.3924s0005 C. grandiflora v1.1
Defline:  (1 of 4) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  5
Name:  ? Cagra.3924s0005 Secondary Identifier:  ? PAC:28900159
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5188 Capsella grandiflora pathologic  
Cgrandiflora PWY-5918 Capsella grandiflora pathologic  
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3924s0005 0.5kb upstream 0.5kb upstream 3407 true Scaffold3924: 17891-21297 Capsella grandiflora
Cagra.3924s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3924: 20798-21297 Capsella grandiflora
Cagra.3924s0005 0.5kb downstream 0.5kb downstream 3407 true Scaffold3924: 17391-20797 Capsella grandiflora
Cagra.3924s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3924: 17391-17890 Capsella grandiflora
Cagra.3924s0005 1.0kb upstream 1.0kb upstream 3907 true Scaffold3924: 17891-21797 Capsella grandiflora
Cagra.3924s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3924: 20798-21797 Capsella grandiflora
Cagra.3924s0005 1.0kb downstream 1.0kb downstream 3907 true Scaffold3924: 16891-20797 Capsella grandiflora
Cagra.3924s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3924: 16891-17890 Capsella grandiflora
Cagra.3924s0005 2.0kb upstream 2.0kb upstream 4907 true Scaffold3924: 17891-22797 Capsella grandiflora
Cagra.3924s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3924: 20798-22797 Capsella grandiflora
Cagra.3924s0005 2.0kb downstream 2.0kb downstream 4907 true Scaffold3924: 15891-20797 Capsella grandiflora
Cagra.3924s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3924: 15891-17890 Capsella grandiflora
Cagra.3924s0005 5.0kb upstream 5.0kb upstream 7907 true Scaffold3924: 17891-25797 Capsella grandiflora
Cagra.3924s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3924: 20798-25797 Capsella grandiflora
Cagra.3924s0005 5.0kb downstream 5.0kb downstream 7907 true Scaffold3924: 12891-20797 Capsella grandiflora
Cagra.3924s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold3924: 12891-17890 Capsella grandiflora
Cagra.3924s0005 10.0kb upstream 10.0kb upstream 12907 true Scaffold3924: 17891-30797 Capsella grandiflora
Cagra.3924s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold3924: 20798-30797 Capsella grandiflora
Cagra.3924s0005 10.0kb downstream 10.0kb downstream 12907 true Scaffold3924: 7891-20797 Capsella grandiflora
Cagra.3924s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold3924: 7891-17890 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381575 5261 Brassicaceae View MSA
123835075 5264 Brassicales-Malvales View MSA
124339524 5266 SBM View MSA
124249324 5268 Malvidae View MSA
124065023 5270 Rosid View MSA
123740640 5271 Pentapetalae View MSA
122787926 5272 Eudicot View MSA
122046625 5273 Angiosperm View MSA
121349445 5274 Embryophyte View MSA
123426828 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain