Gene : Cagra.3501s0158 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10836:SF53 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC2, CYTOSOLIC Genomic Order:  158
Name:  ? Cagra.3501s0158 Secondary Identifier:  ? PAC:28902381
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora SUCSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0158 0.5kb upstream 0.5kb upstream 3042 true Scaffold3501: 537870-540911 Capsella grandiflora
Cagra.3501s0158 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 537870-538369 Capsella grandiflora
Cagra.3501s0158 0.5kb downstream 0.5kb downstream 3042 true Scaffold3501: 538370-541411 Capsella grandiflora
Cagra.3501s0158 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 540912-541411 Capsella grandiflora
Cagra.3501s0158 1.0kb upstream 1.0kb upstream 3542 true Scaffold3501: 537370-540911 Capsella grandiflora
Cagra.3501s0158 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 537370-538369 Capsella grandiflora
Cagra.3501s0158 1.0kb downstream 1.0kb downstream 3542 true Scaffold3501: 538370-541911 Capsella grandiflora
Cagra.3501s0158 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 540912-541911 Capsella grandiflora
Cagra.3501s0158 2.0kb upstream 2.0kb upstream 4542 true Scaffold3501: 536370-540911 Capsella grandiflora
Cagra.3501s0158 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 536370-538369 Capsella grandiflora
Cagra.3501s0158 2.0kb downstream 2.0kb downstream 4542 true Scaffold3501: 538370-542911 Capsella grandiflora
Cagra.3501s0158 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 540912-542911 Capsella grandiflora
Cagra.3501s0158 5.0kb upstream 5.0kb upstream 7542 true Scaffold3501: 533370-540911 Capsella grandiflora
Cagra.3501s0158 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 533370-538369 Capsella grandiflora
Cagra.3501s0158 5.0kb downstream 5.0kb downstream 7542 true Scaffold3501: 538370-545911 Capsella grandiflora
Cagra.3501s0158 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 540912-545911 Capsella grandiflora
Cagra.3501s0158 10.0kb upstream 10.0kb upstream 12542 true Scaffold3501: 528370-540911 Capsella grandiflora
Cagra.3501s0158 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 528370-538369 Capsella grandiflora
Cagra.3501s0158 10.0kb downstream 10.0kb downstream 12542 true Scaffold3501: 538370-550911 Capsella grandiflora
Cagra.3501s0158 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 540912-550911 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381041 5261 Brassicaceae View MSA
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain