Gene : Cagra.3519s0008 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  8
Name:  ? Cagra.3519s0008 Secondary Identifier:  ? PAC:28893896
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3519s0008 0.5kb upstream 0.5kb upstream 2436 true Scaffold3519: 27981-30416 Capsella grandiflora
Cagra.3519s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold3519: 29917-30416 Capsella grandiflora
Cagra.3519s0008 0.5kb downstream 0.5kb downstream 2436 true Scaffold3519: 27481-29916 Capsella grandiflora
Cagra.3519s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold3519: 27481-27980 Capsella grandiflora
Cagra.3519s0008 1.0kb upstream 1.0kb upstream 2936 true Scaffold3519: 27981-30916 Capsella grandiflora
Cagra.3519s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold3519: 29917-30916 Capsella grandiflora
Cagra.3519s0008 1.0kb downstream 1.0kb downstream 2936 true Scaffold3519: 26981-29916 Capsella grandiflora
Cagra.3519s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold3519: 26981-27980 Capsella grandiflora
Cagra.3519s0008 2.0kb upstream 2.0kb upstream 3936 true Scaffold3519: 27981-31916 Capsella grandiflora
Cagra.3519s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold3519: 29917-31916 Capsella grandiflora
Cagra.3519s0008 2.0kb downstream 2.0kb downstream 3936 true Scaffold3519: 25981-29916 Capsella grandiflora
Cagra.3519s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold3519: 25981-27980 Capsella grandiflora
Cagra.3519s0008 5.0kb upstream 5.0kb upstream 6936 true Scaffold3519: 27981-34916 Capsella grandiflora
Cagra.3519s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold3519: 29917-34916 Capsella grandiflora
Cagra.3519s0008 5.0kb downstream 5.0kb downstream 6936 true Scaffold3519: 22981-29916 Capsella grandiflora
Cagra.3519s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold3519: 22981-27980 Capsella grandiflora
Cagra.3519s0008 10.0kb upstream 10.0kb upstream 11936 true Scaffold3519: 27981-39916 Capsella grandiflora
Cagra.3519s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold3519: 29917-39916 Capsella grandiflora
Cagra.3519s0008 10.0kb downstream 10.0kb downstream 11936 true Scaffold3519: 17981-29916 Capsella grandiflora
Cagra.3519s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold3519: 17981-27980 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370172 5261 Brassicaceae View MSA
123838462 5264 Brassicales-Malvales View MSA
124341330 5266 SBM View MSA
124244249 5268 Malvidae View MSA
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain