Gene : Cagra.2622s0040 C. grandiflora v1.1
Defline:  (1 of 1) 4.1.3.1 - Isocitrate lyase / Isocitritase Genomic Order:  40
Name:  ? Cagra.2622s0040 Secondary Identifier:  ? PAC:28895941
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2622s0040 0.5kb upstream 0.5kb upstream 3329 true Scaffold2622: 112509-115837 Capsella grandiflora
Cagra.2622s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold2622: 112509-113008 Capsella grandiflora
Cagra.2622s0040 0.5kb downstream 0.5kb downstream 3329 true Scaffold2622: 113009-116337 Capsella grandiflora
Cagra.2622s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold2622: 115838-116337 Capsella grandiflora
Cagra.2622s0040 1.0kb upstream 1.0kb upstream 3829 true Scaffold2622: 112009-115837 Capsella grandiflora
Cagra.2622s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold2622: 112009-113008 Capsella grandiflora
Cagra.2622s0040 1.0kb downstream 1.0kb downstream 3829 true Scaffold2622: 113009-116837 Capsella grandiflora
Cagra.2622s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold2622: 115838-116837 Capsella grandiflora
Cagra.2622s0040 2.0kb upstream 2.0kb upstream 4829 true Scaffold2622: 111009-115837 Capsella grandiflora
Cagra.2622s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold2622: 111009-113008 Capsella grandiflora
Cagra.2622s0040 2.0kb downstream 2.0kb downstream 4829 true Scaffold2622: 113009-117837 Capsella grandiflora
Cagra.2622s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold2622: 115838-117837 Capsella grandiflora
Cagra.2622s0040 5.0kb upstream 5.0kb upstream 7829 true Scaffold2622: 108009-115837 Capsella grandiflora
Cagra.2622s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold2622: 108009-113008 Capsella grandiflora
Cagra.2622s0040 5.0kb downstream 5.0kb downstream 7829 true Scaffold2622: 113009-120837 Capsella grandiflora
Cagra.2622s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold2622: 115838-120837 Capsella grandiflora
Cagra.2622s0040 10.0kb upstream 10.0kb upstream 12829 true Scaffold2622: 103009-115837 Capsella grandiflora
Cagra.2622s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold2622: 103009-113008 Capsella grandiflora
Cagra.2622s0040 10.0kb downstream 10.0kb downstream 12829 true Scaffold2622: 113009-125837 Capsella grandiflora
Cagra.2622s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold2622: 115838-125837 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375573 5261 Brassicaceae View MSA
123830860 5264 Brassicales-Malvales View MSA
124345344 5266 SBM View MSA
124240855 5268 Malvidae View MSA
124069108 5270 Rosid View MSA
123740253 5271 Pentapetalae View MSA
122791392 5272 Eudicot View MSA
122049985 5273 Angiosperm View MSA
121347561 5274 Embryophyte View MSA
123428552 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain