Gene : Cagra.2387s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR24096:SF219 - LONG CHAIN ACYL-COA SYNTHETASE 8 Genomic Order:  5
Name:  ? Cagra.2387s0005 Secondary Identifier:  ? PAC:28909151
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1121 Capsella grandiflora pathologic  
Cgrandiflora PWY-321 Capsella grandiflora pathologic  
Cgrandiflora PWY-5136 Capsella grandiflora pathologic  
Cgrandiflora PWY-5143 Capsella grandiflora pathologic  
Cgrandiflora PWY-5147 Capsella grandiflora pathologic  
Cgrandiflora PWY-5156 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5885 Capsella grandiflora pathologic  
Cgrandiflora PWY-5971 Capsella grandiflora pathologic  
Cgrandiflora PWY-5989 Capsella grandiflora pathologic  
Cgrandiflora PWY66-389 Capsella grandiflora pathologic  
Cgrandiflora PWY-6733 Capsella grandiflora pathologic  
Cgrandiflora PWY-6803 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2387s0005 0.5kb upstream 0.5kb upstream 4324 true Scaffold2387: 12833-17156 Capsella grandiflora
Cagra.2387s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold2387: 12833-13332 Capsella grandiflora
Cagra.2387s0005 0.5kb downstream 0.5kb downstream 4324 true Scaffold2387: 13333-17656 Capsella grandiflora
Cagra.2387s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold2387: 17157-17656 Capsella grandiflora
Cagra.2387s0005 1.0kb upstream 1.0kb upstream 4824 true Scaffold2387: 12333-17156 Capsella grandiflora
Cagra.2387s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold2387: 12333-13332 Capsella grandiflora
Cagra.2387s0005 1.0kb downstream 1.0kb downstream 4824 true Scaffold2387: 13333-18156 Capsella grandiflora
Cagra.2387s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold2387: 17157-18156 Capsella grandiflora
Cagra.2387s0005 2.0kb upstream 2.0kb upstream 5824 true Scaffold2387: 11333-17156 Capsella grandiflora
Cagra.2387s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold2387: 11333-13332 Capsella grandiflora
Cagra.2387s0005 2.0kb downstream 2.0kb downstream 5824 true Scaffold2387: 13333-19156 Capsella grandiflora
Cagra.2387s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold2387: 17157-19156 Capsella grandiflora
Cagra.2387s0005 5.0kb upstream 5.0kb upstream 8824 true Scaffold2387: 8333-17156 Capsella grandiflora
Cagra.2387s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold2387: 8333-13332 Capsella grandiflora
Cagra.2387s0005 5.0kb downstream 5.0kb downstream 8824 true Scaffold2387: 13333-22156 Capsella grandiflora
Cagra.2387s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold2387: 17157-22156 Capsella grandiflora
Cagra.2387s0005 10.0kb upstream 10.0kb upstream 13824 true Scaffold2387: 3333-17156 Capsella grandiflora
Cagra.2387s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold2387: 3333-13332 Capsella grandiflora
Cagra.2387s0005 10.0kb downstream 10.0kb downstream 13824 true Scaffold2387: 13333-27156 Capsella grandiflora
Cagra.2387s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold2387: 17157-27156 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362649 5261 Brassicaceae View MSA
123830994 5264 Brassicales-Malvales View MSA
124343221 5266 SBM View MSA
124243031 5268 Malvidae View MSA
124066498 5270 Rosid View MSA
123736490 5271 Pentapetalae View MSA
122788185 5272 Eudicot View MSA
122046932 5273 Angiosperm View MSA
121348478 5274 Embryophyte View MSA
123380877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain