Gene : Cagra.2145s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12741:SF5 - CALLOSE SYNTHASE 10 Genomic Order:  2
Name:  ? Cagra.2145s0002 Secondary Identifier:  ? PAC:28905673
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6773 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2145s0002 0.5kb upstream 0.5kb upstream 15283 true Scaffold2145: 1-15283 Capsella grandiflora
Cagra.2145s0002 0.5kb upstream 0.5kb upstream 366 false Scaffold2145: 1-366 Capsella grandiflora
Cagra.2145s0002 0.5kb downstream 0.5kb downstream 15417 true Scaffold2145: 367-15783 Capsella grandiflora
Cagra.2145s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold2145: 15284-15783 Capsella grandiflora
Cagra.2145s0002 1.0kb upstream 1.0kb upstream 15283 true Scaffold2145: 1-15283 Capsella grandiflora
Cagra.2145s0002 1.0kb upstream 1.0kb upstream 366 false Scaffold2145: 1-366 Capsella grandiflora
Cagra.2145s0002 1.0kb downstream 1.0kb downstream 15917 true Scaffold2145: 367-16283 Capsella grandiflora
Cagra.2145s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold2145: 15284-16283 Capsella grandiflora
Cagra.2145s0002 2.0kb upstream 2.0kb upstream 15283 true Scaffold2145: 1-15283 Capsella grandiflora
Cagra.2145s0002 2.0kb upstream 2.0kb upstream 366 false Scaffold2145: 1-366 Capsella grandiflora
Cagra.2145s0002 2.0kb downstream 2.0kb downstream 16917 true Scaffold2145: 367-17283 Capsella grandiflora
Cagra.2145s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold2145: 15284-17283 Capsella grandiflora
Cagra.2145s0002 5.0kb upstream 5.0kb upstream 15283 true Scaffold2145: 1-15283 Capsella grandiflora
Cagra.2145s0002 5.0kb upstream 5.0kb upstream 366 false Scaffold2145: 1-366 Capsella grandiflora
Cagra.2145s0002 5.0kb downstream 5.0kb downstream 19917 true Scaffold2145: 367-20283 Capsella grandiflora
Cagra.2145s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold2145: 15284-20283 Capsella grandiflora
Cagra.2145s0002 10.0kb upstream 10.0kb upstream 15283 true Scaffold2145: 1-15283 Capsella grandiflora
Cagra.2145s0002 10.0kb upstream 10.0kb upstream 366 false Scaffold2145: 1-366 Capsella grandiflora
Cagra.2145s0002 10.0kb downstream 10.0kb downstream 24917 true Scaffold2145: 367-25283 Capsella grandiflora
Cagra.2145s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold2145: 15284-25283 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366913 5261 Brassicaceae View MSA
123828682 5264 Brassicales-Malvales View MSA
124350687 5266 SBM View MSA
124241987 5268 Malvidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain