Gene : Cagra.1671s0292 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31407:SF6 - OXYGEN-EVOLVING ENHANCER PROTEIN 2-1, CHLOROPLASTIC-RELATED Genomic Order:  292
Name:  ? Cagra.1671s0292 Secondary Identifier:  ? PAC:28914328
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0292 0.5kb upstream 0.5kb upstream 2047 true Scaffold1671: 1066892-1068938 Capsella grandiflora
Cagra.1671s0292 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 1066892-1067391 Capsella grandiflora
Cagra.1671s0292 0.5kb downstream 0.5kb downstream 2047 true Scaffold1671: 1067392-1069438 Capsella grandiflora
Cagra.1671s0292 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 1068939-1069438 Capsella grandiflora
Cagra.1671s0292 1.0kb upstream 1.0kb upstream 2547 true Scaffold1671: 1066392-1068938 Capsella grandiflora
Cagra.1671s0292 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 1066392-1067391 Capsella grandiflora
Cagra.1671s0292 1.0kb downstream 1.0kb downstream 2547 true Scaffold1671: 1067392-1069938 Capsella grandiflora
Cagra.1671s0292 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 1068939-1069938 Capsella grandiflora
Cagra.1671s0292 2.0kb upstream 2.0kb upstream 3547 true Scaffold1671: 1065392-1068938 Capsella grandiflora
Cagra.1671s0292 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 1065392-1067391 Capsella grandiflora
Cagra.1671s0292 2.0kb downstream 2.0kb downstream 3547 true Scaffold1671: 1067392-1070938 Capsella grandiflora
Cagra.1671s0292 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 1068939-1070938 Capsella grandiflora
Cagra.1671s0292 5.0kb upstream 5.0kb upstream 6547 true Scaffold1671: 1062392-1068938 Capsella grandiflora
Cagra.1671s0292 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 1062392-1067391 Capsella grandiflora
Cagra.1671s0292 5.0kb downstream 5.0kb downstream 6547 true Scaffold1671: 1067392-1073938 Capsella grandiflora
Cagra.1671s0292 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 1068939-1073938 Capsella grandiflora
Cagra.1671s0292 10.0kb upstream 10.0kb upstream 11547 true Scaffold1671: 1057392-1068938 Capsella grandiflora
Cagra.1671s0292 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 1057392-1067391 Capsella grandiflora
Cagra.1671s0292 10.0kb downstream 10.0kb downstream 11547 true Scaffold1671: 1067392-1078938 Capsella grandiflora
Cagra.1671s0292 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 1068939-1078938 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380872 5261 Brassicaceae View MSA
123836827 5264 Brassicales-Malvales View MSA
124346026 5266 SBM View MSA
124239218 5268 Malvidae View MSA
124061406 5270 Rosid View MSA
123746679 5271 Pentapetalae View MSA
122793257 5272 Eudicot View MSA
122047548 5273 Angiosperm View MSA
121349110 5274 Embryophyte View MSA
123424877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain