Gene : Cagra.0860s0020 C. grandiflora v1.1
Defline:  (1 of 2) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  20
Name:  ? Cagra.0860s0020 Secondary Identifier:  ? PAC:28901397
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0860s0020 0.5kb upstream 0.5kb upstream 7668 true Scaffold860: 92634-100301 Capsella grandiflora
Cagra.0860s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold860: 92634-93133 Capsella grandiflora
Cagra.0860s0020 0.5kb downstream 0.5kb downstream 7668 true Scaffold860: 93134-100801 Capsella grandiflora
Cagra.0860s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold860: 100302-100801 Capsella grandiflora
Cagra.0860s0020 1.0kb upstream 1.0kb upstream 8168 true Scaffold860: 92134-100301 Capsella grandiflora
Cagra.0860s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold860: 92134-93133 Capsella grandiflora
Cagra.0860s0020 1.0kb downstream 1.0kb downstream 8168 true Scaffold860: 93134-101301 Capsella grandiflora
Cagra.0860s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold860: 100302-101301 Capsella grandiflora
Cagra.0860s0020 2.0kb upstream 2.0kb upstream 9168 true Scaffold860: 91134-100301 Capsella grandiflora
Cagra.0860s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold860: 91134-93133 Capsella grandiflora
Cagra.0860s0020 2.0kb downstream 2.0kb downstream 9168 true Scaffold860: 93134-102301 Capsella grandiflora
Cagra.0860s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold860: 100302-102301 Capsella grandiflora
Cagra.0860s0020 5.0kb upstream 5.0kb upstream 12168 true Scaffold860: 88134-100301 Capsella grandiflora
Cagra.0860s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold860: 88134-93133 Capsella grandiflora
Cagra.0860s0020 5.0kb downstream 5.0kb downstream 12168 true Scaffold860: 93134-105301 Capsella grandiflora
Cagra.0860s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold860: 100302-105301 Capsella grandiflora
Cagra.0860s0020 10.0kb upstream 10.0kb upstream 17168 true Scaffold860: 83134-100301 Capsella grandiflora
Cagra.0860s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold860: 83134-93133 Capsella grandiflora
Cagra.0860s0020 10.0kb downstream 10.0kb downstream 17168 true Scaffold860: 93134-110301 Capsella grandiflora
Cagra.0860s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold860: 100302-110301 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain