Gene : Cagra.0882s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED Genomic Order:  5
Name:  ? Cagra.0882s0005 Secondary Identifier:  ? PAC:28909856
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0882s0005 0.5kb upstream 0.5kb upstream 2954 true Scaffold882: 23023-25976 Capsella grandiflora
Cagra.0882s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold882: 23023-23522 Capsella grandiflora
Cagra.0882s0005 0.5kb downstream 0.5kb downstream 2954 true Scaffold882: 23523-26476 Capsella grandiflora
Cagra.0882s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold882: 25977-26476 Capsella grandiflora
Cagra.0882s0005 1.0kb upstream 1.0kb upstream 3454 true Scaffold882: 22523-25976 Capsella grandiflora
Cagra.0882s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold882: 22523-23522 Capsella grandiflora
Cagra.0882s0005 1.0kb downstream 1.0kb downstream 3454 true Scaffold882: 23523-26976 Capsella grandiflora
Cagra.0882s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold882: 25977-26976 Capsella grandiflora
Cagra.0882s0005 2.0kb upstream 2.0kb upstream 4454 true Scaffold882: 21523-25976 Capsella grandiflora
Cagra.0882s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold882: 21523-23522 Capsella grandiflora
Cagra.0882s0005 2.0kb downstream 2.0kb downstream 4454 true Scaffold882: 23523-27976 Capsella grandiflora
Cagra.0882s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold882: 25977-27976 Capsella grandiflora
Cagra.0882s0005 5.0kb upstream 5.0kb upstream 7454 true Scaffold882: 18523-25976 Capsella grandiflora
Cagra.0882s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold882: 18523-23522 Capsella grandiflora
Cagra.0882s0005 5.0kb downstream 5.0kb downstream 6130 true Scaffold882: 23523-29652 Capsella grandiflora
Cagra.0882s0005 5.0kb downstream 5.0kb downstream 3676 false Scaffold882: 25977-29652 Capsella grandiflora
Cagra.0882s0005 10.0kb upstream 10.0kb upstream 12454 true Scaffold882: 13523-25976 Capsella grandiflora
Cagra.0882s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold882: 13523-23522 Capsella grandiflora
Cagra.0882s0005 10.0kb downstream 10.0kb downstream 6130 true Scaffold882: 23523-29652 Capsella grandiflora
Cagra.0882s0005 10.0kb downstream 10.0kb downstream 3676 false Scaffold882: 25977-29652 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369171 5261 Brassicaceae View MSA
123830380 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain