Gene : Cagra.0503s0007 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13270 - PROTEIN C20ORF116-RELATED Genomic Order:  7
Name:  ? Cagra.0503s0007 Secondary Identifier:  ? PAC:28915349
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0503s0007 0.5kb upstream 0.5kb upstream 2192 true Scaffold503: 23909-26100 Capsella grandiflora
Cagra.0503s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold503: 23909-24408 Capsella grandiflora
Cagra.0503s0007 0.5kb downstream 0.5kb downstream 2192 true Scaffold503: 24409-26600 Capsella grandiflora
Cagra.0503s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold503: 26101-26600 Capsella grandiflora
Cagra.0503s0007 1.0kb upstream 1.0kb upstream 2692 true Scaffold503: 23409-26100 Capsella grandiflora
Cagra.0503s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold503: 23409-24408 Capsella grandiflora
Cagra.0503s0007 1.0kb downstream 1.0kb downstream 2692 true Scaffold503: 24409-27100 Capsella grandiflora
Cagra.0503s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold503: 26101-27100 Capsella grandiflora
Cagra.0503s0007 2.0kb upstream 2.0kb upstream 3692 true Scaffold503: 22409-26100 Capsella grandiflora
Cagra.0503s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold503: 22409-24408 Capsella grandiflora
Cagra.0503s0007 2.0kb downstream 2.0kb downstream 3692 true Scaffold503: 24409-28100 Capsella grandiflora
Cagra.0503s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold503: 26101-28100 Capsella grandiflora
Cagra.0503s0007 5.0kb upstream 5.0kb upstream 6692 true Scaffold503: 19409-26100 Capsella grandiflora
Cagra.0503s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold503: 19409-24408 Capsella grandiflora
Cagra.0503s0007 5.0kb downstream 5.0kb downstream 6692 true Scaffold503: 24409-31100 Capsella grandiflora
Cagra.0503s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold503: 26101-31100 Capsella grandiflora
Cagra.0503s0007 10.0kb upstream 10.0kb upstream 11692 true Scaffold503: 14409-26100 Capsella grandiflora
Cagra.0503s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold503: 14409-24408 Capsella grandiflora
Cagra.0503s0007 10.0kb downstream 10.0kb downstream 11692 true Scaffold503: 24409-36100 Capsella grandiflora
Cagra.0503s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold503: 26101-36100 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333894 5261 Brassicaceae Singleton cluster - no MSA
123841557 5264 Brassicales-Malvales View MSA
124341522 5266 SBM View MSA
124251142 5268 Malvidae View MSA
124064342 5270 Rosid View MSA
123740748 5271 Pentapetalae View MSA
122787568 5272 Eudicot View MSA
122042845 5273 Angiosperm View MSA
121345530 5274 Embryophyte View MSA
123425622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain