Gene : Cagra.0402s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13930 - RSAFD1-RELATED Genomic Order:  10
Name:  ? Cagra.0402s0010 Secondary Identifier:  ? PAC:28907937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7286 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0402s0010 0.5kb upstream 0.5kb upstream 3511 true Scaffold402: 35790-39300 Capsella grandiflora
Cagra.0402s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold402: 35790-36289 Capsella grandiflora
Cagra.0402s0010 0.5kb downstream 0.5kb downstream 3511 true Scaffold402: 36290-39800 Capsella grandiflora
Cagra.0402s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold402: 39301-39800 Capsella grandiflora
Cagra.0402s0010 1.0kb upstream 1.0kb upstream 4011 true Scaffold402: 35290-39300 Capsella grandiflora
Cagra.0402s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold402: 35290-36289 Capsella grandiflora
Cagra.0402s0010 1.0kb downstream 1.0kb downstream 4011 true Scaffold402: 36290-40300 Capsella grandiflora
Cagra.0402s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold402: 39301-40300 Capsella grandiflora
Cagra.0402s0010 2.0kb upstream 2.0kb upstream 5011 true Scaffold402: 34290-39300 Capsella grandiflora
Cagra.0402s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold402: 34290-36289 Capsella grandiflora
Cagra.0402s0010 2.0kb downstream 2.0kb downstream 5011 true Scaffold402: 36290-41300 Capsella grandiflora
Cagra.0402s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold402: 39301-41300 Capsella grandiflora
Cagra.0402s0010 5.0kb upstream 5.0kb upstream 8011 true Scaffold402: 31290-39300 Capsella grandiflora
Cagra.0402s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold402: 31290-36289 Capsella grandiflora
Cagra.0402s0010 5.0kb downstream 5.0kb downstream 8011 true Scaffold402: 36290-44300 Capsella grandiflora
Cagra.0402s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold402: 39301-44300 Capsella grandiflora
Cagra.0402s0010 10.0kb upstream 10.0kb upstream 13011 true Scaffold402: 26290-39300 Capsella grandiflora
Cagra.0402s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold402: 26290-36289 Capsella grandiflora
Cagra.0402s0010 10.0kb downstream 10.0kb downstream 13011 true Scaffold402: 36290-49300 Capsella grandiflora
Cagra.0402s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold402: 39301-49300 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370981 5261 Brassicaceae View MSA
123833154 5264 Brassicales-Malvales View MSA
124321850 5266 SBM View MSA
124238866 5268 Malvidae View MSA
124066896 5270 Rosid View MSA
123737792 5271 Pentapetalae View MSA
122788596 5272 Eudicot View MSA
122045303 5273 Angiosperm View MSA
121343824 5274 Embryophyte View MSA
123426537 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain