Gene : Cagra.0114s0010 C. grandiflora v1.1
Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  10
Name:  ? Cagra.0114s0010 Secondary Identifier:  ? PAC:28915755
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6890 Capsella grandiflora pathologic  
Cgrandiflora PWY-6908 Capsella grandiflora pathologic  
Cgrandiflora PWY-6910 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0114s0010 0.5kb upstream 0.5kb upstream 3226 true Scaffold114: 32326-35551 Capsella grandiflora
Cagra.0114s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold114: 35052-35551 Capsella grandiflora
Cagra.0114s0010 0.5kb downstream 0.5kb downstream 3226 true Scaffold114: 31826-35051 Capsella grandiflora
Cagra.0114s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold114: 31826-32325 Capsella grandiflora
Cagra.0114s0010 1.0kb upstream 1.0kb upstream 3726 true Scaffold114: 32326-36051 Capsella grandiflora
Cagra.0114s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold114: 35052-36051 Capsella grandiflora
Cagra.0114s0010 1.0kb downstream 1.0kb downstream 3726 true Scaffold114: 31326-35051 Capsella grandiflora
Cagra.0114s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold114: 31326-32325 Capsella grandiflora
Cagra.0114s0010 2.0kb upstream 2.0kb upstream 4726 true Scaffold114: 32326-37051 Capsella grandiflora
Cagra.0114s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold114: 35052-37051 Capsella grandiflora
Cagra.0114s0010 2.0kb downstream 2.0kb downstream 4726 true Scaffold114: 30326-35051 Capsella grandiflora
Cagra.0114s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold114: 30326-32325 Capsella grandiflora
Cagra.0114s0010 5.0kb upstream 5.0kb upstream 7726 true Scaffold114: 32326-40051 Capsella grandiflora
Cagra.0114s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold114: 35052-40051 Capsella grandiflora
Cagra.0114s0010 5.0kb downstream 5.0kb downstream 7726 true Scaffold114: 27326-35051 Capsella grandiflora
Cagra.0114s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold114: 27326-32325 Capsella grandiflora
Cagra.0114s0010 10.0kb upstream 10.0kb upstream 12726 true Scaffold114: 32326-45051 Capsella grandiflora
Cagra.0114s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold114: 35052-45051 Capsella grandiflora
Cagra.0114s0010 10.0kb downstream 10.0kb downstream 12726 true Scaffold114: 22326-35051 Capsella grandiflora
Cagra.0114s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold114: 22326-32325 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361033 5261 Brassicaceae View MSA
123829578 5264 Brassicales-Malvales View MSA
124340765 5266 SBM View MSA
124237684 5268 Malvidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain