Gene : Cagra.0001s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31268:SF4 - GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED Genomic Order:  5
Name:  ? Cagra.0001s0005 Secondary Identifier:  ? PAC:28894726
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5337 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0001s0005 0.5kb upstream 0.5kb upstream 4014 true Scaffold1: 17876-21889 Capsella grandiflora
Cagra.0001s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold1: 17876-18375 Capsella grandiflora
Cagra.0001s0005 0.5kb downstream 0.5kb downstream 4014 true Scaffold1: 18376-22389 Capsella grandiflora
Cagra.0001s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold1: 21890-22389 Capsella grandiflora
Cagra.0001s0005 1.0kb upstream 1.0kb upstream 4514 true Scaffold1: 17376-21889 Capsella grandiflora
Cagra.0001s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold1: 17376-18375 Capsella grandiflora
Cagra.0001s0005 1.0kb downstream 1.0kb downstream 4514 true Scaffold1: 18376-22889 Capsella grandiflora
Cagra.0001s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold1: 21890-22889 Capsella grandiflora
Cagra.0001s0005 2.0kb upstream 2.0kb upstream 5514 true Scaffold1: 16376-21889 Capsella grandiflora
Cagra.0001s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold1: 16376-18375 Capsella grandiflora
Cagra.0001s0005 2.0kb downstream 2.0kb downstream 5514 true Scaffold1: 18376-23889 Capsella grandiflora
Cagra.0001s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold1: 21890-23889 Capsella grandiflora
Cagra.0001s0005 5.0kb upstream 5.0kb upstream 8514 true Scaffold1: 13376-21889 Capsella grandiflora
Cagra.0001s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold1: 13376-18375 Capsella grandiflora
Cagra.0001s0005 5.0kb downstream 5.0kb downstream 8514 true Scaffold1: 18376-26889 Capsella grandiflora
Cagra.0001s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold1: 21890-26889 Capsella grandiflora
Cagra.0001s0005 10.0kb upstream 10.0kb upstream 13514 true Scaffold1: 8376-21889 Capsella grandiflora
Cagra.0001s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold1: 8376-18375 Capsella grandiflora
Cagra.0001s0005 10.0kb downstream 10.0kb downstream 13514 true Scaffold1: 18376-31889 Capsella grandiflora
Cagra.0001s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold1: 21890-31889 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373240 5261 Brassicaceae View MSA
123830992 5264 Brassicales-Malvales View MSA
124345375 5266 SBM View MSA
124249240 5268 Malvidae View MSA
124064190 5270 Rosid View MSA
123740319 5271 Pentapetalae View MSA
122793686 5272 Eudicot View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain