Gene : Araha.21305s0006 A. halleri v1.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  6
Name:  ? Araha.21305s0006 Secondary Identifier:  ? PAC:28850221
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CAROTENOID-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-5943 Arabidopsis halleri pathologic  
Ahalleri PWY-5947 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.21305s0006 0.5kb upstream 0.5kb upstream 4512 true Scaffold21305: 22528-27039 Arabidopsis halleri
Araha.21305s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold21305: 22528-23027 Arabidopsis halleri
Araha.21305s0006 0.5kb downstream 0.5kb downstream 4512 true Scaffold21305: 23028-27539 Arabidopsis halleri
Araha.21305s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold21305: 27040-27539 Arabidopsis halleri
Araha.21305s0006 1.0kb upstream 1.0kb upstream 5012 true Scaffold21305: 22028-27039 Arabidopsis halleri
Araha.21305s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold21305: 22028-23027 Arabidopsis halleri
Araha.21305s0006 1.0kb downstream 1.0kb downstream 5012 true Scaffold21305: 23028-28039 Arabidopsis halleri
Araha.21305s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold21305: 27040-28039 Arabidopsis halleri
Araha.21305s0006 2.0kb upstream 2.0kb upstream 6012 true Scaffold21305: 21028-27039 Arabidopsis halleri
Araha.21305s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold21305: 21028-23027 Arabidopsis halleri
Araha.21305s0006 2.0kb downstream 2.0kb downstream 6012 true Scaffold21305: 23028-29039 Arabidopsis halleri
Araha.21305s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold21305: 27040-29039 Arabidopsis halleri
Araha.21305s0006 5.0kb upstream 5.0kb upstream 9012 true Scaffold21305: 18028-27039 Arabidopsis halleri
Araha.21305s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold21305: 18028-23027 Arabidopsis halleri
Araha.21305s0006 5.0kb downstream 5.0kb downstream 9012 true Scaffold21305: 23028-32039 Arabidopsis halleri
Araha.21305s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold21305: 27040-32039 Arabidopsis halleri
Araha.21305s0006 10.0kb upstream 10.0kb upstream 14012 true Scaffold21305: 13028-27039 Arabidopsis halleri
Araha.21305s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold21305: 13028-23027 Arabidopsis halleri
Araha.21305s0006 10.0kb downstream 10.0kb downstream 14012 true Scaffold21305: 23028-37039 Arabidopsis halleri
Araha.21305s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold21305: 27040-37039 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375141 5261 Brassicaceae View MSA
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain