Gene : Carub.0003s0335 C. rubella v1.1
Defline:  (1 of 3) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  335
Name:  ? Carub.0003s0335 Secondary Identifier:  ? PAC:39240376
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0335 0.5kb upstream 0.5kb upstream 2909 true scaffold_3: 1105153-1108061 Capsella rubella
Carub.0003s0335 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1105153-1105652 Capsella rubella
Carub.0003s0335 0.5kb downstream 0.5kb downstream 2909 true scaffold_3: 1105653-1108561 Capsella rubella
Carub.0003s0335 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1108062-1108561 Capsella rubella
Carub.0003s0335 1.0kb upstream 1.0kb upstream 3409 true scaffold_3: 1104653-1108061 Capsella rubella
Carub.0003s0335 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1104653-1105652 Capsella rubella
Carub.0003s0335 1.0kb downstream 1.0kb downstream 3409 true scaffold_3: 1105653-1109061 Capsella rubella
Carub.0003s0335 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1108062-1109061 Capsella rubella
Carub.0003s0335 2.0kb upstream 2.0kb upstream 4409 true scaffold_3: 1103653-1108061 Capsella rubella
Carub.0003s0335 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1103653-1105652 Capsella rubella
Carub.0003s0335 2.0kb downstream 2.0kb downstream 4409 true scaffold_3: 1105653-1110061 Capsella rubella
Carub.0003s0335 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1108062-1110061 Capsella rubella
Carub.0003s0335 5.0kb upstream 5.0kb upstream 7409 true scaffold_3: 1100653-1108061 Capsella rubella
Carub.0003s0335 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1100653-1105652 Capsella rubella
Carub.0003s0335 5.0kb downstream 5.0kb downstream 7409 true scaffold_3: 1105653-1113061 Capsella rubella
Carub.0003s0335 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1108062-1113061 Capsella rubella
Carub.0003s0335 10.0kb upstream 10.0kb upstream 12409 true scaffold_3: 1095653-1108061 Capsella rubella
Carub.0003s0335 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1095653-1105652 Capsella rubella
Carub.0003s0335 10.0kb downstream 10.0kb downstream 12409 true scaffold_3: 1105653-1118061 Capsella rubella
Carub.0003s0335 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1108062-1118061 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381041 5261 Brassicaceae View MSA
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain