Gene : Carub.0003s2603 C. rubella v1.1
Defline:  (1 of 1) PTHR24096//PTHR24096:SF219 - FAMILY NOT NAMED // LONG CHAIN ACYL-COA SYNTHETASE 8 Genomic Order:  2603
Name:  ? Carub.0003s2603 Secondary Identifier:  ? PAC:39241506
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1121 Capsella rubella pathologic  
Crubella PWY-321 Capsella rubella pathologic  
Crubella PWY-5136 Capsella rubella pathologic  
Crubella PWY-5143 Capsella rubella pathologic  
Crubella PWY-5147 Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5885 Capsella rubella pathologic  
Crubella PWY-5971 Capsella rubella pathologic  
Crubella PWY-5989 Capsella rubella pathologic  
Crubella PWY66-389 Capsella rubella pathologic  
Crubella PWY-6733 Capsella rubella pathologic  
Crubella PWY-6803 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2603 0.5kb upstream 0.5kb upstream 4132 true scaffold_3: 9735059-9739190 Capsella rubella
Carub.0003s2603 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9735059-9735558 Capsella rubella
Carub.0003s2603 0.5kb downstream 0.5kb downstream 4132 true scaffold_3: 9735559-9739690 Capsella rubella
Carub.0003s2603 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9739191-9739690 Capsella rubella
Carub.0003s2603 1.0kb upstream 1.0kb upstream 4632 true scaffold_3: 9734559-9739190 Capsella rubella
Carub.0003s2603 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9734559-9735558 Capsella rubella
Carub.0003s2603 1.0kb downstream 1.0kb downstream 4632 true scaffold_3: 9735559-9740190 Capsella rubella
Carub.0003s2603 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9739191-9740190 Capsella rubella
Carub.0003s2603 2.0kb upstream 2.0kb upstream 5632 true scaffold_3: 9733559-9739190 Capsella rubella
Carub.0003s2603 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9733559-9735558 Capsella rubella
Carub.0003s2603 2.0kb downstream 2.0kb downstream 5632 true scaffold_3: 9735559-9741190 Capsella rubella
Carub.0003s2603 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9739191-9741190 Capsella rubella
Carub.0003s2603 5.0kb upstream 5.0kb upstream 8632 true scaffold_3: 9730559-9739190 Capsella rubella
Carub.0003s2603 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9730559-9735558 Capsella rubella
Carub.0003s2603 5.0kb downstream 5.0kb downstream 8632 true scaffold_3: 9735559-9744190 Capsella rubella
Carub.0003s2603 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9739191-9744190 Capsella rubella
Carub.0003s2603 10.0kb upstream 10.0kb upstream 13632 true scaffold_3: 9725559-9739190 Capsella rubella
Carub.0003s2603 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9725559-9735558 Capsella rubella
Carub.0003s2603 10.0kb downstream 10.0kb downstream 13632 true scaffold_3: 9735559-9749190 Capsella rubella
Carub.0003s2603 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9739191-9749190 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362649 5261 Brassicaceae View MSA
123830994 5264 Brassicales-Malvales View MSA
124343221 5266 SBM View MSA
124243031 5268 Malvidae View MSA
124066498 5270 Rosid View MSA
123736490 5271 Pentapetalae View MSA
122788185 5272 Eudicot View MSA
122046932 5273 Angiosperm View MSA
121348478 5274 Embryophyte View MSA
123380877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain