Gene : Carub.0008s1332 C. rubella v1.1
Defline:  (1 of 1) 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  1332
Name:  ? Carub.0008s1332 Secondary Identifier:  ? PAC:39252841
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSPECAT-PWY Capsella rubella pathologic  
Crubella BSUBPOLYAMSYN-PWY Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s1332 0.5kb upstream 0.5kb upstream 4488 true scaffold_8: 7615648-7620135 Capsella rubella
Carub.0008s1332 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 7615648-7616147 Capsella rubella
Carub.0008s1332 0.5kb downstream 0.5kb downstream 4488 true scaffold_8: 7616148-7620635 Capsella rubella
Carub.0008s1332 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 7620136-7620635 Capsella rubella
Carub.0008s1332 1.0kb upstream 1.0kb upstream 4988 true scaffold_8: 7615148-7620135 Capsella rubella
Carub.0008s1332 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 7615148-7616147 Capsella rubella
Carub.0008s1332 1.0kb downstream 1.0kb downstream 4988 true scaffold_8: 7616148-7621135 Capsella rubella
Carub.0008s1332 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 7620136-7621135 Capsella rubella
Carub.0008s1332 2.0kb upstream 2.0kb upstream 5988 true scaffold_8: 7614148-7620135 Capsella rubella
Carub.0008s1332 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 7614148-7616147 Capsella rubella
Carub.0008s1332 2.0kb downstream 2.0kb downstream 5988 true scaffold_8: 7616148-7622135 Capsella rubella
Carub.0008s1332 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 7620136-7622135 Capsella rubella
Carub.0008s1332 5.0kb upstream 5.0kb upstream 8988 true scaffold_8: 7611148-7620135 Capsella rubella
Carub.0008s1332 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 7611148-7616147 Capsella rubella
Carub.0008s1332 5.0kb downstream 5.0kb downstream 8988 true scaffold_8: 7616148-7625135 Capsella rubella
Carub.0008s1332 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 7620136-7625135 Capsella rubella
Carub.0008s1332 10.0kb upstream 10.0kb upstream 13988 true scaffold_8: 7606148-7620135 Capsella rubella
Carub.0008s1332 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 7606148-7616147 Capsella rubella
Carub.0008s1332 10.0kb downstream 10.0kb downstream 13988 true scaffold_8: 7616148-7630135 Capsella rubella
Carub.0008s1332 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 7620136-7630135 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374357 5261 Brassicaceae View MSA
123829244 5264 Brassicales-Malvales View MSA
124341220 5266 SBM View MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain