Gene : Carub.0001s0408 C. rubella v1.1
Defline:  (1 of 56) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  408
Name:  ? Carub.0001s0408 Secondary Identifier:  ? PAC:39231723
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0408 0.5kb upstream 0.5kb upstream 3057 true scaffold_1: 1439290-1442346 Capsella rubella
Carub.0001s0408 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1441847-1442346 Capsella rubella
Carub.0001s0408 0.5kb downstream 0.5kb downstream 3057 true scaffold_1: 1438790-1441846 Capsella rubella
Carub.0001s0408 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1438790-1439289 Capsella rubella
Carub.0001s0408 1.0kb upstream 1.0kb upstream 3557 true scaffold_1: 1439290-1442846 Capsella rubella
Carub.0001s0408 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1441847-1442846 Capsella rubella
Carub.0001s0408 1.0kb downstream 1.0kb downstream 3557 true scaffold_1: 1438290-1441846 Capsella rubella
Carub.0001s0408 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1438290-1439289 Capsella rubella
Carub.0001s0408 2.0kb upstream 2.0kb upstream 4557 true scaffold_1: 1439290-1443846 Capsella rubella
Carub.0001s0408 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1441847-1443846 Capsella rubella
Carub.0001s0408 2.0kb downstream 2.0kb downstream 4557 true scaffold_1: 1437290-1441846 Capsella rubella
Carub.0001s0408 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1437290-1439289 Capsella rubella
Carub.0001s0408 5.0kb upstream 5.0kb upstream 7557 true scaffold_1: 1439290-1446846 Capsella rubella
Carub.0001s0408 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1441847-1446846 Capsella rubella
Carub.0001s0408 5.0kb downstream 5.0kb downstream 7557 true scaffold_1: 1434290-1441846 Capsella rubella
Carub.0001s0408 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1434290-1439289 Capsella rubella
Carub.0001s0408 10.0kb upstream 10.0kb upstream 12557 true scaffold_1: 1439290-1451846 Capsella rubella
Carub.0001s0408 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1441847-1451846 Capsella rubella
Carub.0001s0408 10.0kb downstream 10.0kb downstream 12557 true scaffold_1: 1429290-1441846 Capsella rubella
Carub.0001s0408 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1429290-1439289 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364822 5261 Brassicaceae View MSA
123834441 5264 Brassicales-Malvales View MSA
124346040 5266 SBM View MSA
124242384 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain